Bioconductor DNA

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738

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DNA repeats

23 months ago me-nobody • 0

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988

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.1 years ago by James W. MacDonald 67k • written 3.1 years ago by HELEN • 0

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1.3k

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software codon usage bias dna

updated 5.0 years ago by anamaria ▴ 10 • written 5.1 years ago by jol.espinoz ▴ 40

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726

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DNA alphabet

updated 5.8 years ago by James W. MacDonald 67k • written 5.8 years ago by fjia304 • 0

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2.1k

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decipher DNA biostrings

updated 7.0 years ago by Erik Wright ▴ 150 • written 7.0 years ago by reubenmcgregor88 • 0

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2.8k

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biostrings mask repeatmasker DNA

updated 3.9 years ago by ivantsers • 0 • written 7.1 years ago by beausoleilmo • 0

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1.5k

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ABI sequence DNA melting curve

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by Prasanth ▴ 20

7 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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