Bioconductor DNASeq

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6.9k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.8 years ago by Gordon Smyth 52k • written 9.9 years ago by samuel collombet ▴ 140

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1.7k

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r ggbio ggplot2 dnaseq genomicranges

updated 9.7 years ago by arfranco ▴ 130 • written 9.7 years ago by fathniz • 0

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1.8k

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dnacopy dnaseq genomic cn.mops cnv

updated 6.7 years ago by Günter Klambauer ▴ 540 • written 6.7 years ago by Cased • 0

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401

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DESeq2 NanoporeRNASeq DNASeq

updated 7 months ago by Michael Love 43k • written 7 months ago by Dot • 0

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4.0k

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DNASeq rstudio fasta Biostrings csv

3.6 years ago HELEN • 0

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9.4k

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deseq2 dnaseq

updated 10.5 years ago by Michael Love 43k • written 10.5 years ago by hughes.drew ▴ 100

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1.6k

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biostrings subsetting View dnastring dnaseq

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by arado1 • 0

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809

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.7 years ago koushik • 0

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846

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DNASeq CNEr

3.3 years ago Md Abrar • 0

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1.7k

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DNASeq Cancer DNASeq Cancer

13.3 years ago Martin Morgan 25k

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965

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DNASeq RNASeq SingleCell

3.6 years ago camp ▴ 10

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2.0k

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job jobs rnaseq chipseq dnaseq Job

9.5 years ago Rory Stark ★ 5.2k

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1.5k

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exome dnaseq WES

8.8 years ago arvand.akbari • 0

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1.3k

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footprinting centipede atac-seq dnaseq

8.0 years ago rbronste ▴ 60

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1.4k

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dnaseq rtracklayer paired-end reads

7.7 years ago zwfanwz678 • 0

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1.3k

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dnaseq pathway analysis protein biomarkers

7.1 years ago emadelhewihy • 0

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1.2k

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cn.mops dnaseq bioinformatics

6.6 years ago Cased • 0

17 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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