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Deconvolution
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution
rnaseqGene
RNAseq
18 months ago
JG13
• 0
2
votes
2
replies
2.0k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
3.9 years ago
Hasan Alanya
• 0
0
votes
0
replies
1.4k
views
Best deconvolution method
Deconvolution
4.1 years ago
Barista
• 0
0
votes
1
reply
1.0k
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
5.5 years ago
kavator
▴ 30
0
votes
0
replies
1.4k
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
5.7 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
1.2k
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 5.8 years ago by
Gordon Smyth
53k • written 5.8 years ago by
antgomo
• 0
0
votes
4
replies
1.8k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
bruce.moran
▴ 30
0
votes
0
replies
1.4k
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
7.9 years ago
casey.rimland
▴ 170
1
vote
1
reply
1.4k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
7.9 years ago
WouterDeCoster
▴ 130
1
vote
1
reply
3.5k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 10.2 years ago by
Steve Lianoglou
★ 13k • written 10.2 years ago by
Pauly Lin
▴ 160
0
votes
0
replies
2.0k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
10.5 years ago
carleshf
▴ 10
11 results • Page
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Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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