Bioconductor Deconvolution

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484

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deconvolution rnaseqGene RNAseq

9 months ago JG13 • 0

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1.7k

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deconvolution r scRNAseq bioinformatics

3.1 years ago Hasan Alanya • 0

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1.2k

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Deconvolution

3.4 years ago Barista • 0

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857

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PSEA Deconvolution

4.8 years ago kavator ▴ 30

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1.2k

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methylCC deconvolution methylation dmrseq serum

5.0 years ago marcin.bazyliszek • 0

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979

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limma microarray deconvolution cell type

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by antgomo • 0

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1.6k

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deseq2 deconvolution normalization limma

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by bruce.moran ▴ 30

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1.2k

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deconvolution methods

7.2 years ago casey.rimland ▴ 170

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1.3k

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deconvolution rnaseq psea

7.2 years ago WouterDeCoster ▴ 130

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3.1k

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deconvolution rna-seq

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by Pauly Lin ▴ 160

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1.8k

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deconvolution cellmix

9.8 years ago carleshf ▴ 10

11 results • Page 1 of 1

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Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Votes

what the test method for enrichGO in clusterProfiler?

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

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