Showing : Diffbind • reset
4
votes
11
replies
4.7k
views
How to get all possible comparisons in DiffBind
diffbind
updated 3.8 years ago by ★ 5.2k • written 6.8 years ago by ▴ 10
0
votes
7
replies
2.9k
views
dba.count() error when re-centering peaks
DiffBind
updated 3.2 years ago by • 0 • written 3.8 years ago by • 0
0
votes
2
replies
948
views
`dbs.all` object in the vignette
DiffBind
3.8 years ago Mark • 0
1
vote
6
replies
3.8k
views
dba.count error
DiffBind
updated 3.8 years ago by ★ 5.2k • written 3.8 years ago by ▴ 10
0
votes
1
reply
727
views
DiffBind issue: zero values for all peaks in one chromosome
DiffBind
updated 3.8 years ago by ★ 5.2k • written 3.8 years ago by • 0
1
vote
6
replies
2.2k
views
DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
DiffBind dba.count
updated 3.8 years ago by ★ 5.2k • written 3.8 years ago by • 0
2
votes
3
replies
1.2k
views
Not able to replicated Diffbind example dataset.
DiffBind
3.8 years ago Ayyappa ▴ 10
0
votes
0
replies
748
views
Not able to replicated Diffbind example dataset.
DiffBind
3.8 years ago Ayyappa ▴ 10
1
vote
10
replies
2.3k
views
DiffBind: Values of Called1 and Called2 do not appear to coincide with input peaks
DiffBind
updated 3.8 years ago by ★ 5.2k • written 3.8 years ago by • 0
1
vote
1
reply
1.6k
views
DiffBind scoreCol value question
DiffBind ChIPSeq chipseq
updated 3.9 years ago by ★ 5.2k • written 3.9 years ago by • 0
6
votes
19
replies
8.7k
views
DiffBind GreyListChIP error: Error: BiocParallel errors
DiffBind
updated 2.2 years ago by • 0 • written 4.3 years ago by ▴ 10
2
votes
4
replies
2.3k
views
DiffBind: dba.plotProfile(profiles)
DiffBind
updated 20 months ago by ▴ 10 • written 3.9 years ago by • 0
0
votes
1
reply
1.1k
views
diffbind binding affinity matrix
diffbind DiffBind
updated 3.9 years ago by ★ 5.2k • written 4.0 years ago by • 0
0
votes
2
replies
3.1k
views
DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExper…
DiffBind ChIPSeqData
updated 3.4 years ago by ▴ 10 • written 3.9 years ago by • 0
3
votes
4
replies
4.0k
views
dba.contrast in DiffBind
v3.4.0 DiffBind
updated 3.9 years ago by ★ 5.2k • written 3.9 years ago by • 0
1
vote
2
replies
1.3k
views
How to include/show/add correction factors/numbers to the Diffbind heat map tiles
DiffBind
updated 4.0 years ago by ▴ 60 • written 4.0 years ago by • 0
3
votes
4
replies
3.3k
views
How to get the list of genes from DiffBind dba.report or dba.peakset
diffbind
updated 4.1 years ago by ▴ 10 • written 7.3 years ago by ▴ 10
0
votes
0
replies
1.4k
views
DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind ChIPSeq Normalization SpikeIn
4.1 years ago Drew • 0
1
vote
2
replies
1.7k
views
DiffBind in Bioconda
DiffBind Bioconda Versions
4.1 years ago Riba Michela ▴ 90
0
votes
0
replies
1.2k
views
DiffBind dba.counts memory issue
DiffBind
4.1 years ago rreese2 • 0
0
votes
2
replies
2.1k
views
how to select specific genes from heatmap of differentially accessible regions of ATAC-seq in DiffBind
DiffBind
updated 4.1 years ago by ★ 5.2k • written 4.1 years ago by • 0
0
votes
1
reply
1.2k
views
Can DiffBind do differential analysis for un-paired peaksets?
DiffBind
updated 4.1 years ago by ★ 5.2k • written 4.2 years ago by • 0
0
votes
2
replies
1.8k
views
Diffbind dba.plotProfile attempt to select less than one element in OneIndex
DiffBind
4.1 years ago bhanratt • 0
0
votes
3
replies
1.2k
views
DiifBind_DBA_report
DiffBind
updated 3.9 years ago by ★ 5.2k • written 4.2 years ago by ▴ 90
2
votes
1
reply
1.5k
views
Diffbind: differences between design vs no design (same comparison)?
DiffBind
updated 4.2 years ago by ★ 5.2k • written 4.2 years ago by • 0
1
vote
2
replies
1.2k
views
DiffBind fold parameter vs. IfcThreshold in DESeq2
DiffBind
4.2 years ago Shuwan ▴ 10
3
votes
4
replies
2.0k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel R DiffBind
updated 3.9 years ago by ★ 5.2k • written 4.2 years ago by • 0
0
votes
3
replies
1.1k
views
DiffBind Occupancy analysis
DiffBind
updated 4.2 years ago by ★ 5.2k • written 4.2 years ago by • 0
1
vote
3
replies
1.8k
views
issue with DiffBind dba.count
bam bai DiffBind dba.count Diffbind
updated 4.2 years ago by ★ 5.2k • written 4.2 years ago by ▴ 10
0
votes
0
replies
812
views
Diffbind issue
DiffBind
4.2 years ago mtsompana ▴ 10
3
votes
12
replies
5.1k
views
Is it possible to change how DiffBind merge peaks?
DiffBind ChIPseq
updated 4.2 years ago by ★ 5.2k • written 6.1 years ago by ▴ 20
0
votes
0
replies
866
views
DiffBind error during normalization
DiffBind
4.3 years ago jseg ▴ 10
0
votes
2
replies
1.6k
views
DiffBind
bflip dba.report DiffBind
4.3 years ago • updated 4.2 years ago Riba Michela ▴ 90
2
votes
3
replies
2.3k
views
An error using Diffbind plotprofile
ChIPSeq profileplyr DiffBind
updated 4.2 years ago by ▴ 20 • written 4.3 years ago by • 0
1
vote
3
replies
2.4k
views
Using block and design together in Diffbind 3.0?
DiffBind R ATACSeq
updated 4.3 years ago by ▴ 80 • written 4.3 years ago by • 0
0
votes
0
replies
823
views
Diffbind without replicates
DiffBind
4.3 years ago Danielle • 0
5
votes
8
replies
3.3k
views
how to construct a DBA object from count matrix
ChIPSeq ATACSeq differentially_occupied DiffBind
updated 3.4 years ago by ▴ 20 • written 4.3 years ago by ▴ 30
1
vote
1
reply
1.6k
views
DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)
DESeq2 Diffbind
updated 4.3 years ago by ★ 5.2k • written 4.3 years ago by ▴ 10
1
vote
2
replies
1.1k
views
Output of normalizing a dba object with DBA_DESEQ2,normalize = DBA_NORM_RLE in Diffbind
DiffBind
4.3 years ago Alexandre ▴ 10
0
votes
0
replies
1.2k
views
Are broad/narrow peak comparable?
Peaks MAC2 DiffBind
4.3 years ago Yuan Tian ▴ 290
0
votes
0
replies
776
views
Interpretation of diffbind coefficients
DiffBind
4.3 years ago Alexandre ▴ 10
1
vote
2
replies
1.2k
views
DiffBind dba.report(): Question about DBA_ALL_METHODS
DiffBind
4.3 years ago etiennedanis • 0
1
vote
1
reply
893
views
How are greylists derived in DiffBind
DiffBind
updated 4.3 years ago by ★ 5.2k • written 4.4 years ago by ▴ 10
2
votes
1
reply
6.0k
views
DiffBind Error in if (file.info(peaks)$size > 0) { : missing value where TRUE/FALSE needed
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by ▴ 10
1
vote
1
reply
1.2k
views
DiffBind normalisation factor retrieval
edgeR Normalization DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by • 0
12
votes
6
replies
6.5k
views
How to select summit size for histone ChiP-Seq in Diffbind
Diffbind Histone Chip-Seq Summit size
updated 3.5 years ago by ★ 5.2k • written 8.1 years ago by ▴ 40
1
vote
4
replies
2.2k
views
Binding matrix created by DiffBind
ATACSeq DiffBind
4.4 years ago sh.kazempour94 ▴ 10
0
votes
1
reply
1.0k
views
Hard coding in DiffBind DBA.R line 968
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by ★ 1.3k
0
votes
1
reply
1.1k
views
DiffBind confusions
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by • 0
2
votes
8
replies
3.0k
views
DiffBind -- Error: No sites have activity greater than minMaxval
DiffBind
updated 3.1 years ago by • 0 • written 4.4 years ago by ▴ 10
678 results • Page 4 of 14
Recent ...
Replies
Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Locations • All
Italy, 16 minutes ago
United States, 23 minutes ago
Finland, 48 minutes ago
United States, 53 minutes ago
United States, 1 hour ago
Traffic: 824 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6