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updated 5 weeks ago by
Gordon Smyth
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written 5 weeks ago by
Jack S.
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updated 12 weeks ago by
Gordon Smyth
50k
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written 3 months ago by
Shaimaa Gamal
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3
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updated 12 weeks ago by
Gordon Smyth
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written 12 weeks ago by
Shaimaa Gamal
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updated 8 weeks ago by
Gordon Smyth
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written 8 weeks ago by
Jack S.
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50
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2
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287
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12 weeks ago • updated 11 weeks ago
Shaimaa Gamal
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0
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3
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updated 7 months ago by
James W. MacDonald
65k
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written 7 months ago by
stuartthafass
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3
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288
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updated 3 months ago by
Gordon Smyth
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written 3 months ago by
Shaimaa Gamal
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3
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updated 11 months ago by
swbarnes2
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1.3k
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written 11 months ago by
tinattn.nguyen
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2
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289
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updated 10 weeks ago by
ATpoint
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4.1k
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written 11 weeks ago by
Shaimaa Gamal
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updated 3 months ago by
Gordon Smyth
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written 4 months ago by
michelafrancesconi8
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updated 12 weeks ago by
Michael Love
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written 3 months ago by
Abhishek Singh
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2
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2
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3
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updated 12 weeks ago by
James W. MacDonald
65k
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written 12 weeks ago by
Shaimaa Gamal
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0
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769
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updated 7 months ago by
Hervé Pagès
16k
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written 7 months ago by
nromerov
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Dinesh
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238
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updated 26 days ago by
James W. MacDonald
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written 26 days ago by
Shaimaa Gamal
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0
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reply
396
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updated 4 months ago by
ATpoint
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4.1k
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written 4 months ago by
kubracelikbas4
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written 3 months ago by
pl23
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updated 9 months ago by
ATpoint
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written 9 months ago by
Abir.khazaal
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updated 5 months ago by
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written 5 months ago by
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updated 11 months ago by
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written 11 months ago by
suphamon.j
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updated 12 months ago by
Gordon Smyth
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written 12 months ago by
Sara
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updated 5 months ago by
Gordon Smyth
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written 5 months ago by
Jurgen
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updated 9 months ago by
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written 9 months ago by
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11 months ago
mpitz
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updated 11 months ago by
Gordon Smyth
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written 11 months ago by
Sofía
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updated 8 months ago by
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written 8 months ago by
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6 months ago • updated 5 months ago
Luca
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updated 9 months ago by
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written 9 months ago by
gld-bioinf
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updated 5 months ago by
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written 5 months ago by
Pez
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10
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updated 9 months ago by
James W. MacDonald
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written 9 months ago by
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updated 10 months ago by
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written 10 months ago by
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411
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updated 7 months ago by
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written 7 months ago by
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644
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updated 10 months ago by
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written 26 days ago by
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updated 6 weeks ago by
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Replies
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★
5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
```
limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
•
0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★
4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM`
```
> library(Biostrings)
> data(HNF4alpha)
> libr…
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