Bioconductor Ensembldb

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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5.6k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 4 weeks ago by Shiva • 0 • written 5.5 years ago by Guido Hooiveld ★ 3.9k

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4.1k

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biomaRt ensembldb UniProt.ws

updated 6 months ago by Marcel Ramos 690 • written 21 months ago by Recep ▴ 20

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2.6k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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1.5k

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ensembldb biomaRt

updated 9 months ago by Michael Love 41k • written 9 months ago by Benjamin ▴ 30

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1.4k

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ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Max ▴ 10

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967

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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843

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AnnotationHubSoftware ensembldb

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by cjag • 0

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800

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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562

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GO ensembldb

6 months ago Rockbar • 0

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503

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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491

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Rsubread ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Ya • 0

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315

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ensembldb genomei GenomeInfoDb

12 weeks ago Kai Hu ▴ 70

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262

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ensembldb

updated 11 days ago by James W. MacDonald 65k • written 12 days ago by Fara • 0

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227

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ensembldb biomaRt

updated 11 weeks ago by Robin • 0 • written 12 weeks ago by Pez ▴ 10

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226

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 11 weeks ago by James W. MacDonald 65k • written 12 weeks ago by ramonmassoni ▴ 10

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171

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ensembldb transcriptome genome coordinateconversion

updated 4 weeks ago by Michael Love 41k • written 5 weeks ago by saadmurtazakhan ▴ 10

17 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k