Bioconductor FPKM

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2.5k

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FPKM RNASeqData DEAnalysis limma

15 months ago Ethan Nguyen • 0

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2.0k

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DESeq2 BatchEffect tpm fpkm

20 months ago vk • 0

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4.7k

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RUVSeq FPKM removeBatchEffect RNA-seq sva

updated 3.0 years ago by ATpoint ★ 4.6k • written 3.8 years ago by Xiaojie Cheng • 0

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5.2k

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DESEQ2 fpkm rpkm tpm

3.3 years ago Sandhiya • 0

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2.3k

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dge fpkm rna-seq

updated 3.6 years ago by Kevin Blighe ★ 4.0k • written 3.6 years ago by lkianmehr • 0

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1.4k

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tximport rsem transcript abundance TPM FPKM

updated 4.2 years ago by Michael Love 43k • written 4.3 years ago by m.metsger • 0

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14k

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counts fpkm fpkm() normalization deseq2

updated 14 months ago by Hamza • 0 • written 6.0 years ago by chiara.facciotto • 0

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5.2k

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edgeR pvalue qvalue fpkm differential gene expression

updated 6.2 years ago by Steve Lianoglou ★ 13k • written 6.2 years ago by Harrisonesmith • 0

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2.3k

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deseq2 edger fpkm counts fc

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by ZihaoXing • 0

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1.4k

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deseq2 edger fpkm counts TCGA

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by ZihaoXing • 0

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1.7k

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GenomicFeatures TPM FPKM lncRNA

6.6 years ago Ina Hoeschele ▴ 620

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6.0k

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FPKM

7.2 years ago Nithisha ▴ 10

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3.6k

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deseq2 fpkm

updated 3.5 years ago by Michael Love 43k • written 7.4 years ago by rhart • 0

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1.4k

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r fpkm bioinformatics

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by fromhj304 ▴ 10

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3.3k

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edgeR logFC FPKM

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by Sara ▴ 20

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6.4k

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limma voom voom rsem fpkm

8.3 years ago komal.rathi ▴ 120

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2.3k

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deseq2 cummerbund rlog fpkm clustering

9.0 years ago Jon Bråte ▴ 260

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4.7k

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deseq2 fpkm

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by ashley.doane ▴ 20

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2.8k

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count rnaseq rpkm fpkm edgeR

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by thibault.lorin ▴ 10

19 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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