Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GVIZ
•
reset
5
votes
14
replies
4.9k
views
gene symbols in Gviz
Gviz
8.8 years ago
Bogdan
▴ 670
28
votes
25
replies
5.8k
views
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
Gviz
rtracklayer
updated 6.8 years ago by
aina.jene
▴ 10 • written 7.2 years ago by
Ramiro Magno
▴ 100
0
votes
8
replies
2.1k
views
Gviz and AnnotateTrack and memory usage
gviz
updated 8.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
Bogdan
▴ 670
0
votes
7
replies
4.4k
views
gviz: controlling track labels
gviz
7.7 years ago
Janet Young
▴ 740
6
votes
7
replies
2.9k
views
Error: Failed to set session genome to...
gviz
rtracklayer
updated 8.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.0 years ago by
liz.ingsimmons
▴ 140
2
votes
32
replies
4.8k
views
Gviz error 'Expectation Failed'
gviz
ucsc
7.9 years ago • updated 7.8 years ago
Tom
▴ 10
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
0
votes
6
replies
2.9k
views
Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz
visualization
9.3 years ago • updated 9.2 years ago
Asta Laiho
▴ 120
6
votes
11
replies
2.5k
views
Gviz ChromHMM colouring for AnnotationTracks
gviz
chromHMM
updated 6.4 years ago by
Tiphaine Martin
▴ 40 • written 7.5 years ago by
gammyknee
▴ 10
0
votes
4
replies
3.3k
views
'external_gene_id' error when invoking the BiomartGeneRegionTrack function
Gviz
biomart
updated 9.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.5 years ago by
garrisrg
▴ 10
0
votes
4
replies
2.0k
views
Gviz: add/change bands in ideogram
gviz
9.4 years ago
Ludwig Geistlinger
▴ 70
3
votes
10
replies
3.0k
views
Gviz: How to color parts of transcript in BiomartGeneRegionTrack?
gviz
updated 7.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
stianlagstad
▴ 90
1
vote
9
replies
2.2k
views
Gviz IdeogramTrack Hsapiens/Mmusculus error
gviz
8.9 years ago
Merienne Nicolas
▴ 120
2
votes
3
replies
2.7k
views
Gviz Sashimi Plots
Gviz
Sashimi Plots
updated 8.1 years ago by
Robert Ivanek
▴ 730 • written 8.1 years ago by
edco84
• 0
0
votes
12
replies
2.1k
views
Gviz: feature protein_coding not working
gviz
biomart
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.8 years ago by
Simon B.
• 0
0
votes
3
replies
1.2k
views
Question: Change the color of the link between 2 features belonging to the same group depending on the type of the link
annotationTrack
Gviz
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.8 years ago by
Tiphaine Martin
▴ 40
0
votes
3
replies
1.4k
views
Gviz: BiomartGeneRegionTrack error
Gviz
Biomart
gviz
biomart
updated 8.9 years ago by
Thomas Maurel
▴ 800 • written 8.9 years ago by
Chao-Jen Wong
▴ 40
0
votes
4
replies
2.2k
views
Gviz: plotting mean values of biological replicates
gviz
updated 8.8 years ago by
Aliaksei Holik
▴ 350 • written 8.8 years ago by
toomas.silla
• 0
3
votes
3
replies
4.3k
views
Gviz - Cannot plot exons from gencode GTF files
gviz
8.2 years ago
romain.fenouil
▴ 10
0
votes
4
replies
1.5k
views
Change the features and colors in BiomartGeneRegionTrack
gviz
8.8 years ago
Tiphaine Martin
▴ 40
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.2 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
0
votes
6
replies
2.6k
views
Displaying very deep coverage in Gviz
Coverage
Gviz
Coverage
Gviz
updated 10.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.0 years ago by
Lance Parsons
▴ 130
2
votes
6
replies
4.5k
views
Gviz Color Filling
Gviz
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.7 years ago by
dustar1986
▴ 10
4
votes
5
replies
2.3k
views
Gviz: Plot only exons?
gviz
8.1 years ago
stianlagstad
▴ 90
2
votes
5
replies
2.2k
views
GVIZ shows error if plotting only one id
gviz
updated 8.9 years ago by
dbrawand
• 0 • written 9.1 years ago by
tonja.r
▴ 80
6
votes
4
replies
2.8k
views
Gviz highlighted regions displaying behind main plot
gviz
software error
updated 9.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.4 years ago by
Malcolm Perry
▴ 40
1
vote
6
replies
4.1k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error
bug
crash
Gviz
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.9 years ago by
Philip Lijnzaad
▴ 160
1
vote
4
replies
2.5k
views
Gviz: BiomartGeneRegionTrack filters=??
gviz
updated 8.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.6 years ago by
ahlberg.gustav
• 0
3
votes
10
replies
2.0k
views
Shifted dashed frame in Gviz boxplot
gviz
boxplot
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
enricoferrero
▴ 660
2
votes
4
replies
2.9k
views
Gviz: Set height to avoid empty whitespace below reads in an AlignmentsTrack?
gviz
8.0 years ago
stianlagstad
▴ 90
0
votes
7
replies
2.4k
views
question about Gviz
Gviz
Gviz
11.2 years ago
Bogdan
▴ 670
1
vote
3
replies
2.1k
views
Gviz and older ENSEMBL biomarts
gviz
biomart
updated 9.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.5 years ago by
fmueller
• 0
2
votes
5
replies
1.9k
views
Gviz - display/indicate soft-clipped bases - indicate supplementary alignments
gviz
bam
pacbio
updated 7.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
thackl
• 0
3
votes
3
replies
1.1k
views
Gviz: Should the add53 parameter react to reverseStrand = TRUE ?
gviz
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
stianlagstad
▴ 90
2
votes
4
replies
1.3k
views
Gviz: HighlightTrack doesn't react to reverseStrand = TRUE ?
gviz
updated 8.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
stianlagstad
▴ 90
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 11.0 years ago by
Robert Ivanek
▴ 730 • written 11.0 years ago by
Guest User
★ 13k
0
votes
2
replies
2.2k
views
use BiomartGeneRegionTrack with the dataset grch37.ensembl.org
gviz
ensembl
biomart
9.4 years ago
Tiphaine Martin
▴ 40
2
votes
3
replies
1.2k
views
Gviz: Keep transcripts on same line even when using reverseStrand+showId?
gviz
updated 8.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
stianlagstad
▴ 90
5
votes
7
replies
1.8k
views
Gviz: How to plot UTRs with GRanges object?
gviz
updated 7.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
stianlagstad
▴ 90
1
vote
4
replies
2.6k
views
It is possible to use Gviz without a valid UCSC genome?
gviz
UCSC
updated 8.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.4k
views
Trouble with Ideogram Plots
Gviz
ideogram
8.8 years ago
rowlandsd
• 0
0
votes
5
replies
2.3k
views
Gviz - BiomartGeneRegionTrack and gene symbol
gviz
8.3 years ago • updated 8.2 years ago
romain.fenouil
▴ 10
0
votes
6
replies
2.3k
views
Gviz: axes related parameters
Coverage
Gviz
Coverage
Gviz
updated 10.2 years ago by
Steve Lianoglou
★ 13k • written 10.2 years ago by
Maxim
▴ 170
3
votes
2
replies
1.7k
views
Gviz - Arrow Head Resizing
gviz
9.1 years ago
bst
▴ 10
0
votes
3
replies
1.6k
views
gviz library plot 2 gene loci in the same figure
gviz
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.7 years ago by
tangming2005
▴ 190
0
votes
2
replies
1.4k
views
Gviz error with collapseTranscripts=TRUE
GO
Gviz
GO
Gviz
updated 10.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.9 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.3k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 9.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.1 years ago by
ari.loytynoja
• 0
0
votes
3
replies
1.6k
views
Gviz - Beginner - Problem reproducing the provided examples
Gviz
Gviz
updated 10.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.7 years ago by
Jager, Dominik
▴ 50
0
votes
3
replies
2.3k
views
howto plot a figure like UCSC genome browser by Gviz
Gviz
Gviz
updated 10.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.6 years ago by
Ou, Jianhong
★ 1.3k
3
votes
3
replies
1.8k
views
Gviz::IdeogramTrack() with chrM does not work
Gviz
chrM
updated 9.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.2 years ago by
Robert Castelo
★ 3.3k
50 results • Page
1 of 1
Recent ...
Replies
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
Awards
• All
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Popular Question
to
Ian D.
▴ 70
Popular Question
to
junhui.li11
• 0
Scholar
to
James W. MacDonald
65k
Locations
• All
United States,
1 minute ago
United States,
8 minutes ago
United States,
8 minutes ago
Melbourne, Australia,
10 minutes ago
WEHI, Melbourne, Australia,
19 minutes ago
Traffic: 579 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6