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GViz
•
reset
5
votes
14
replies
4.9k
views
gene symbols in Gviz
Gviz
8.9 years ago
Bogdan
▴ 670
28
votes
25
replies
5.9k
views
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
Gviz
rtracklayer
updated 6.9 years ago by
aina.jene
▴ 10 • written 7.3 years ago by
Ramiro Magno
▴ 100
0
votes
8
replies
2.1k
views
Gviz and AnnotateTrack and memory usage
gviz
updated 8.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
Bogdan
▴ 670
0
votes
7
replies
4.4k
views
gviz: controlling track labels
gviz
7.8 years ago
Janet Young
▴ 740
6
votes
7
replies
3.0k
views
Error: Failed to set session genome to...
gviz
rtracklayer
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.0 years ago by
liz.ingsimmons
▴ 140
2
votes
32
replies
4.9k
views
Gviz error 'Expectation Failed'
gviz
ucsc
8.0 years ago • updated 7.9 years ago
Tom
▴ 10
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.4 years ago
Andy91
▴ 60
0
votes
6
replies
2.9k
views
Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz
visualization
9.4 years ago • updated 9.3 years ago
Asta Laiho
▴ 120
6
votes
11
replies
2.5k
views
Gviz ChromHMM colouring for AnnotationTracks
gviz
chromHMM
updated 6.5 years ago by
Tiphaine Martin
▴ 40 • written 7.5 years ago by
gammyknee
▴ 10
0
votes
4
replies
3.3k
views
'external_gene_id' error when invoking the BiomartGeneRegionTrack function
Gviz
biomart
updated 9.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.6 years ago by
garrisrg
▴ 10
0
votes
4
replies
2.1k
views
Gviz: add/change bands in ideogram
gviz
9.5 years ago
Ludwig Geistlinger
▴ 70
3
votes
10
replies
3.0k
views
Gviz: How to color parts of transcript in BiomartGeneRegionTrack?
gviz
updated 7.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.3 years ago by
stianlagstad
▴ 90
1
vote
9
replies
2.2k
views
Gviz IdeogramTrack Hsapiens/Mmusculus error
gviz
9.0 years ago • updated 8.9 years ago
Merienne Nicolas
▴ 120
2
votes
3
replies
2.7k
views
Gviz Sashimi Plots
Gviz
Sashimi Plots
updated 8.2 years ago by
Robert Ivanek
▴ 730 • written 8.2 years ago by
edco84
• 0
0
votes
12
replies
2.1k
views
Gviz: feature protein_coding not working
gviz
biomart
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.9 years ago by
Simon B.
• 0
0
votes
3
replies
1.2k
views
Question: Change the color of the link between 2 features belonging to the same group depending on the type of the link
annotationTrack
Gviz
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.8 years ago by
Tiphaine Martin
▴ 40
0
votes
3
replies
1.4k
views
Gviz: BiomartGeneRegionTrack error
Gviz
Biomart
gviz
biomart
updated 9.0 years ago by
Thomas Maurel
▴ 800 • written 9.0 years ago by
Chao-Jen Wong
▴ 40
0
votes
4
replies
2.3k
views
Gviz: plotting mean values of biological replicates
gviz
updated 8.9 years ago by
Aliaksei Holik
▴ 350 • written 8.9 years ago by
toomas.silla
• 0
3
votes
3
replies
4.4k
views
Gviz - Cannot plot exons from gencode GTF files
gviz
8.3 years ago
romain.fenouil
▴ 10
0
votes
4
replies
1.5k
views
Change the features and colors in BiomartGeneRegionTrack
gviz
8.9 years ago • updated 8.8 years ago
Tiphaine Martin
▴ 40
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.2 years ago by
bernatgel
▴ 150 • written 7.3 years ago by
dulunar
▴ 10
0
votes
6
replies
2.7k
views
Displaying very deep coverage in Gviz
Coverage
Gviz
Coverage
Gviz
updated 10.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.0 years ago by
Lance Parsons
▴ 130
2
votes
6
replies
4.6k
views
Gviz Color Filling
Gviz
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.7 years ago by
dustar1986
▴ 10
4
votes
5
replies
2.4k
views
Gviz: Plot only exons?
gviz
8.2 years ago
stianlagstad
▴ 90
2
votes
5
replies
2.2k
views
GVIZ shows error if plotting only one id
gviz
updated 9.0 years ago by
dbrawand
• 0 • written 9.1 years ago by
tonja.r
▴ 80
6
votes
4
replies
2.8k
views
Gviz highlighted regions displaying behind main plot
gviz
software error
updated 9.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.5 years ago by
Malcolm Perry
▴ 40
1
vote
6
replies
4.2k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error
bug
crash
Gviz
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.9 years ago by
Philip Lijnzaad
▴ 160
1
vote
4
replies
2.5k
views
Gviz: BiomartGeneRegionTrack filters=??
gviz
updated 8.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.6 years ago by
ahlberg.gustav
• 0
3
votes
10
replies
2.0k
views
Shifted dashed frame in Gviz boxplot
gviz
boxplot
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.1 years ago by
enricoferrero
▴ 660
2
votes
4
replies
2.9k
views
Gviz: Set height to avoid empty whitespace below reads in an AlignmentsTrack?
gviz
8.1 years ago
stianlagstad
▴ 90
0
votes
7
replies
2.5k
views
question about Gviz
Gviz
Gviz
11.3 years ago
Bogdan
▴ 670
1
vote
3
replies
2.2k
views
Gviz and older ENSEMBL biomarts
gviz
biomart
updated 9.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.6 years ago by
fmueller
• 0
2
votes
5
replies
1.9k
views
Gviz - display/indicate soft-clipped bases - indicate supplementary alignments
gviz
bam
pacbio
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
thackl
• 0
3
votes
3
replies
1.2k
views
Gviz: Should the add53 parameter react to reverseStrand = TRUE ?
gviz
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.3 years ago by
stianlagstad
▴ 90
2
votes
4
replies
1.3k
views
Gviz: HighlightTrack doesn't react to reverseStrand = TRUE ?
gviz
updated 8.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.3 years ago by
stianlagstad
▴ 90
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 11.1 years ago by
Robert Ivanek
▴ 730 • written 11.1 years ago by
Guest User
★ 13k
0
votes
2
replies
2.2k
views
use BiomartGeneRegionTrack with the dataset grch37.ensembl.org
gviz
ensembl
biomart
9.4 years ago
Tiphaine Martin
▴ 40
2
votes
3
replies
1.2k
views
Gviz: Keep transcripts on same line even when using reverseStrand+showId?
gviz
updated 8.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.3 years ago by
stianlagstad
▴ 90
5
votes
7
replies
1.8k
views
Gviz: How to plot UTRs with GRanges object?
gviz
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
stianlagstad
▴ 90
1
vote
4
replies
2.6k
views
It is possible to use Gviz without a valid UCSC genome?
gviz
UCSC
updated 8.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.4k
views
Trouble with Ideogram Plots
Gviz
ideogram
8.9 years ago
rowlandsd
• 0
0
votes
5
replies
2.3k
views
Gviz - BiomartGeneRegionTrack and gene symbol
gviz
8.3 years ago
romain.fenouil
▴ 10
0
votes
6
replies
2.3k
views
Gviz: axes related parameters
Coverage
Gviz
Coverage
Gviz
updated 10.3 years ago by
Steve Lianoglou
★ 13k • written 10.3 years ago by
Maxim
▴ 170
3
votes
2
replies
1.7k
views
Gviz - Arrow Head Resizing
gviz
9.2 years ago
bst
▴ 10
0
votes
3
replies
1.6k
views
gviz library plot 2 gene loci in the same figure
gviz
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.8 years ago by
tangming2005
▴ 190
0
votes
2
replies
1.4k
views
Gviz error with collapseTranscripts=TRUE
GO
Gviz
GO
Gviz
updated 10.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 11.0 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.3k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 9.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.2 years ago by
ari.loytynoja
• 0
0
votes
3
replies
1.6k
views
Gviz - Beginner - Problem reproducing the provided examples
Gviz
Gviz
updated 10.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.7 years ago by
Jager, Dominik
▴ 50
0
votes
3
replies
2.3k
views
howto plot a figure like UCSC genome browser by Gviz
Gviz
Gviz
updated 10.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.7 years ago by
Ou, Jianhong
★ 1.3k
3
votes
3
replies
1.8k
views
Gviz::IdeogramTrack() with chrM does not work
Gviz
chrM
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
Robert Castelo
★ 3.3k
50 results • Page
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Comment: Error in gseDO function
by
Javier
• 0
Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
Ali Osman
• 0
Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…
Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
by
Marek Gierlinski
▴ 30
Two years on and the issue is still there. Thank you Arthur for the solution!
Comment: Cannot install oligo on Fedora
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mbassal
• 0
so whats the solution for this error?
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
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A: DESeq2: add annotations (from data frame) to DESeqDataSet
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