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HELP
•
reset
0
votes
5
replies
912
views
Bioconductor unable to update 'curl'
curl
HELP
9 months ago
kagodwi2
• 0
0
votes
2
replies
876
views
iam not able to do retrive data using GEOquery R package
HELP
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
ramya20kumar20
• 0
0
votes
9
replies
2.2k
views
'path' must be string
HELP
path
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
cpierce2
• 0
0
votes
1
reply
774
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 2.4 years ago by
DrFizz
• 0 • written 2.4 years ago by
melander
• 0
2
votes
6
replies
2.6k
views
Help me find the bug
DESeq2
HELP
2.8 years ago
Michael
• 0
0
votes
4
replies
2.7k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Michael
• 0
0
votes
2
replies
1.2k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3.2 years ago
michela
▴ 20
3
votes
4
replies
1.8k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
michela
▴ 20
0
votes
10
replies
2.6k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
3.2 years ago
michela
▴ 20
0
votes
1
reply
1.1k
views
Data visualization
HELP
Data
updated 3.3 years ago by
Guido Hooiveld
★ 4.1k • written 3.3 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
3.1k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 2.9 years ago by
Rodrigo
▴ 10 • written 3.8 years ago by
Jessica
▴ 10
1
vote
2
replies
3.5k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
4.1 years ago
lexi.kellington
• 0
1
vote
9
replies
7.2k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 3.5 years ago by
Sanatan
• 0 • written 4.7 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
2.3k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.7 years ago
hgalmoore
• 0
0
votes
1
reply
2.6k
views
setup microbiome error
help
software error
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
mafusa20
• 0
0
votes
2
replies
1.5k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 7.0 years ago by
Aaron Lun
★ 29k • written 7.0 years ago by
rm1238
• 0
1
vote
4
replies
8.0k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.8 years ago by
Guangchuang Yu
★ 1.2k • written 8.8 years ago by
Mataivic
• 0
4
votes
5
replies
3.1k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 9.5 years ago by
Aaron Lun
★ 29k • written 9.5 years ago by
knipehf
• 0
0
votes
7
replies
2.7k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
9.5 years ago
fischer87
• 0
0
votes
2
replies
1.8k
views
help me to analysis my data
limma
help
updated 10.1 years ago by
svlachavas
▴ 840 • written 10.1 years ago by
libya.tahani
• 0
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Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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