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HELP
•
reset
0
votes
5
replies
803
views
Bioconductor unable to update 'curl'
curl
HELP
7 months ago
kagodwi2
• 0
0
votes
2
replies
814
views
iam not able to do retrive data using GEOquery R package
HELP
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
ramya20kumar20
• 0
0
votes
9
replies
2.2k
views
'path' must be string
HELP
path
updated 15 months ago by
James W. MacDonald
68k • written 15 months ago by
cpierce2
• 0
0
votes
1
reply
749
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 2.3 years ago by
DrFizz
• 0 • written 2.3 years ago by
melander
• 0
2
votes
6
replies
2.6k
views
Help me find the bug
DESeq2
HELP
2.7 years ago
Michael
• 0
0
votes
4
replies
2.6k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 2.7 years ago by
Basti
▴ 780 • written 2.7 years ago by
Michael
• 0
0
votes
2
replies
1.2k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3.1 years ago
michela
▴ 20
3
votes
4
replies
1.8k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 3.1 years ago by
James W. MacDonald
68k • written 3.1 years ago by
michela
▴ 20
0
votes
10
replies
2.5k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
3.1 years ago
michela
▴ 20
0
votes
1
reply
1.0k
views
Data visualization
HELP
Data
updated 3.2 years ago by
Guido Hooiveld
★ 4.1k • written 3.2 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
3.0k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 2.8 years ago by
Rodrigo
▴ 10 • written 3.7 years ago by
Jessica
▴ 10
1
vote
2
replies
3.5k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
4.0 years ago
lexi.kellington
• 0
1
vote
9
replies
7.1k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 3.4 years ago by
Sanatan
• 0 • written 4.6 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
2.2k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.6 years ago
hgalmoore
• 0
0
votes
1
reply
2.5k
views
setup microbiome error
help
software error
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
mafusa20
• 0
0
votes
2
replies
1.5k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
rm1238
• 0
1
vote
4
replies
7.9k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.7 years ago by
Guangchuang Yu
★ 1.2k • written 8.7 years ago by
Mataivic
• 0
4
votes
5
replies
3.0k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 9.4 years ago by
Aaron Lun
★ 29k • written 9.4 years ago by
knipehf
• 0
0
votes
7
replies
2.7k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
9.4 years ago
fischer87
• 0
0
votes
2
replies
1.7k
views
help me to analysis my data
limma
help
updated 10.0 years ago by
svlachavas
▴ 840 • written 10.0 years ago by
libya.tahani
• 0
20 results • Page
1 of 1
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Comment: Ensembl 115 has been released!
by
eja.gsssssswwse.r.m
• 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction
by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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