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•
reset
0
votes
4
replies
932
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how to extract list in quantile in R
R
quantile
list
15 months ago
sat
• 0
1
vote
0
replies
1.8k
views
stuck on unimplemented type 'list' in 'EncodeElement'
list
save
dataframe
updated 24 months ago by
shepherl
3.9k • written 24 months ago by
orticello.1160797
▴ 10
0
votes
4
replies
1.5k
views
how to reformat complex list object (derived with TCGAbiolinks)?
TCGA
tcgabiolinks
list
reformat
6.4 years ago
Guido Hooiveld
★ 4.0k
3
votes
4
replies
3.8k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
vinod.acear
▴ 50
1
vote
12
replies
2.2k
views
How can I integrate set of compressedList in multiple list into one without duplication?
r
iranges
findoverlaps
IntegerList
List
7.8 years ago • updated 7.6 years ago
jian_liangli
• 0
3
votes
5
replies
1.7k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion
data manipulation
s4vectors
List
8.0 years ago • updated 7.9 years ago
Jurat Shahidin
▴ 80
2
votes
3
replies
4.4k
views
Deseq2. Cluster of an specific list
deseq2
heatmap
clustering
file
list
updated 8.7 years ago by
Michael Love
42k • written 8.8 years ago by
chariko
• 0
4
votes
2
replies
3.5k
views
select keys from org.Mm.eg.db
org.mm.eg.db
select
list
updated 8.7 years ago by
James W. MacDonald
66k • written 8.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
preferred mirrors list - permanently
mirror
preferred
list
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
lejeczek
▴ 10
0
votes
1
reply
1.2k
views
Mixing list from Piano package output
Piano
List
updated 9.2 years ago by
Leif Väremo
▴ 70 • written 9.2 years ago by
nonCodingGene
▴ 10
2
votes
4
replies
1.9k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.2 years ago by
Chris Seidel
▴ 80 • written 9.2 years ago by
gen
▴ 30
11 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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swbarnes2
★ 1.4k
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to
Stephanie M. Gogarten
▴ 870
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Jonathan
▴ 10
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Frederico Moraes Ferreira
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