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R quantile list

21 months ago sat • 0

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list save dataframe

updated 2.5 years ago by shepherl 4.1k • written 2.5 years ago by orticello.1160797 ▴ 10

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1.8k

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TCGA tcgabiolinks list reformat

7.0 years ago Guido Hooiveld ★ 4.1k

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4.1k

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dnastringset list stringset

updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by vinod.acear ▴ 50

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r iranges findoverlaps IntegerList List

8.4 years ago • updated 8.1 years ago jian_liangli • 0

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2.0k

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coercion data manipulation s4vectors List

8.5 years ago Jurat Shahidin ▴ 80

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deseq2 heatmap clustering file list

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by chariko • 0

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3.8k

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org.mm.eg.db select list

updated 9.3 years ago by James W. MacDonald 67k • written 9.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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mirror preferred list

updated 9.6 years ago by Dan Tenenbaum ★ 8.2k • written 9.6 years ago by lejeczek ▴ 10

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Piano List

updated 9.7 years ago by Leif Väremo ▴ 70 • written 9.7 years ago by nonCodingGene ▴ 10

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2.1k

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rle list irange grangeslist

updated 9.7 years ago by Chris Seidel ▴ 80 • written 9.7 years ago by gen ▴ 30

11 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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