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1.2k

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R quantile list

20 months ago sat • 0

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2.2k

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list save dataframe

updated 2.4 years ago by shepherl 4.1k • written 2.4 years ago by orticello.1160797 ▴ 10

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1.7k

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TCGA tcgabiolinks list reformat

6.8 years ago Guido Hooiveld ★ 4.1k

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4.0k

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dnastringset list stringset

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by vinod.acear ▴ 50

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r iranges findoverlaps IntegerList List

8.2 years ago • updated 8.0 years ago jian_liangli • 0

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1.9k

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coercion data manipulation s4vectors List

8.3 years ago Jurat Shahidin ▴ 80

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4.5k

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deseq2 heatmap clustering file list

updated 9.1 years ago by Michael Love 42k • written 9.2 years ago by chariko • 0

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3.8k

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org.mm.eg.db select list

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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mirror preferred list

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by lejeczek ▴ 10

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Piano List

updated 9.6 years ago by Leif Väremo ▴ 70 • written 9.6 years ago by nonCodingGene ▴ 10

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rle list irange grangeslist

updated 9.6 years ago by Chris Seidel ▴ 80 • written 9.6 years ago by gen ▴ 30

11 results • Page 1 of 1

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Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k