Showing : MethylationArrayData • reset
3
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6
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
5 months ago aldea85 • 0
2
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6
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1.1k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 170 • written 12 months ago by • 0
2
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2
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1.2k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.1 years ago fluentin44 • 0
1
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1
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1.8k
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DMR Plot
dmr MethylationArrayData DMRcatedata
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
1
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4
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2.7k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
3.2 years ago shweta • 0
1
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2
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640
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
11 months ago • updated 10 months ago Irene • 0
1
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1
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559
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
1
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3
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518
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 8 months ago by 65k • written 8 months ago by • 0
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0
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720
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
2.7 years ago macsue.jacques ▴ 10
0
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0
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252
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
4 months ago kyj2226 • 0
0
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6
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3.4k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
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0
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1.0k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.2 years ago D ▴ 10
0
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0
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147
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
8 weeks ago • updated 6 weeks ago Giovanni Calice ▴ 160
0
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1
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910
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 2.9 years ago by ▴ 780 • written 2.9 years ago by • 0
0
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2
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1.4k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
18 months ago shuangshuang • 0
0
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0
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735
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
2.7 years ago ponche_de_kiwi • 0
0
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0
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829
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
2.4 years ago Paulina • 0
0
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5
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1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 14 months ago by • 0
0
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1
reply
540
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 13 months ago by 50k • written 13 months ago by • 0
0
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4
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1.0k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 14 months ago by 65k • written 14 months ago by • 0
0
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0
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717
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
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1
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474
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
22 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0 by James W. MacDonald 65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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