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Replies
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
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Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first.
Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
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James W. MacDonald
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See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
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James W. MacDonald
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You already ran a temporal assay. Now you can compare each time point to the baseline.
The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
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Aurora
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I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
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But.. How to run a temporal assay?
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