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NMF
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0
votes
1
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2.9k
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NMF installation with current R version
NMF
Biobase
updated 23 months ago by
shepherl
3.9k • written 24 months ago by
Abhishek
• 0
5
votes
5
replies
1.7k
views
Running NMF for single cell
NMF
scater
3.6 years ago
lirongrossmann
▴ 40
0
votes
0
replies
415
views
NMF in single cell analysis
NMF
ZeiselBrainData
3.8 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.4k
views
Error in NMF estimation
MutationalPatterns
NMF
5.0 years ago
TRASA
• 0
0
votes
7
replies
3.0k
views
nmf function not working
somaticsignatures
NMF
updated 5.5 years ago by
Xin
• 0 • written 5.8 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
790
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.9 years ago
Seymoo
• 0
0
votes
1
reply
1.0k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.2 years ago by
shepherl
3.9k • written 6.2 years ago by
samuel.fux
• 0
0
votes
4
replies
2.4k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
noname
• 0
0
votes
6
replies
2.8k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 6.6 years ago by
grimmmmer
• 0 • written 7.2 years ago by
ns
• 0
0
votes
0
replies
1.2k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.2 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.2k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
thrabe
• 0
0
votes
1
reply
1.6k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 8.4 years ago by
Jeff Leek
▴ 650 • written 8.4 years ago by
kw10
• 0
0
votes
1
reply
1.4k
views
NMF Package error
NMF
bioconductor
R
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
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Replies
Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Vincent J. Carey, Jr.
6.7k
btw that was run on M1 mac
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Vincent J. Carey, Jr.
6.7k
the test is not portable > aa <- aa_mutmat(acc = "MIYS930101", aaindex = "aaindex2") > str(aa) num [1:20, 1:20] 0.34 -0.0…
Comment: Method to find pathways different between 2 groups
by
Chris
• 0
Sorry for not clear. I just try to find papers use this method for learning purpose. Which gives more context and detail examples, so I may…
Comment: Improving the design matrices vignette in RNAseq123
by
Lluís Revilla Sancho
▴ 730
Cool. Thanks for looking into it.
Votes
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
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