Bioconductor NanoStringDiff

Showing : NanoStringDiff • reset

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NanoStringDiff clusterProfiler fgsea

2.5 years ago pg45863 ▴ 10

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DESeq2 NanoStringDiff limma

2.5 years ago pg45863 ▴ 10

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Aleksandra • 0

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NanoStringDiff

updated 3.0 years ago by James W. MacDonald 68k • written 3.0 years ago by Paraskevi • 0

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DifferentialExpression NanoStringDiff

4.0 years ago sanrie10 • 0

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limma edgeR DESeq2 NanoStringDiff

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by reberya • 0

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Nan NanoStringDiff

4.4 years ago choijamts • 0

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NanoStringDiff NanoString nCounter DE analysis

updated 2.1 years ago by georgersmith • 0 • written 6.3 years ago by lim6432 ▴ 60

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NanoStringDiff

4.7 years ago YM • 0

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Bioconductor Transcriptomics NanoStringDiff

updated 5.1 years ago by Laurent Gatto 1.6k • written 5.1 years ago by Pedro ▴ 10

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NanoStringDiff

5.9 years ago stephen.pollo • 0

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NanoStringDiff GLM Gene expression

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by Guillaume Robert • 0

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NanoStringDiff

updated 22 months ago by pjanas • 0 • written 6.5 years ago by noelleenright ▴ 10

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nanostringdiff nanostring NanoStringDiff

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by casey.rimland ▴ 170

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.4 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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