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NanoStringDiff
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2.1k
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
2.6 years ago
pg45863
▴ 10
0
votes
2
replies
1.8k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
2.6 years ago
pg45863
▴ 10
0
votes
1
reply
1.2k
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
Aleksandra
• 0
0
votes
2
replies
881
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 3.0 years ago by
James W. MacDonald
68k • written 3.0 years ago by
Paraskevi
• 0
0
votes
0
replies
1.0k
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
4.0 years ago
sanrie10
• 0
5
votes
7
replies
2.5k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 4.3 years ago by
James W. MacDonald
68k • written 4.3 years ago by
reberya
• 0
3
votes
2
replies
1.5k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
4.5 years ago
choijamts
• 0
3
votes
6
replies
2.7k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 2.1 years ago by
georgersmith
• 0 • written 6.4 years ago by
lim6432
▴ 60
0
votes
0
replies
1.0k
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
4.8 years ago
YM
• 0
1
vote
1
reply
1.4k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 5.2 years ago by
Laurent Gatto
1.6k • written 5.2 years ago by
Pedro
▴ 10
1
vote
7
replies
1.7k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
5.9 years ago
stephen.pollo
• 0
0
votes
2
replies
1.3k
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
Guillaume Robert
• 0
3
votes
3
replies
2.0k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 23 months ago by
pjanas
• 0 • written 6.6 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.8k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.8k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
8.4 years ago
c.kohler
• 0
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Comment: EuroBioC2026 abstract submission is open!
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TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
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TikTsokaasocissalpc
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In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
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Sounds good. @[time][1] [1]: https://timeduration.github.io
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by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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