Bioconductor NanoStringDiff

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2.0k

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NanoStringDiff clusterProfiler fgsea

2.3 years ago pg45863 ▴ 10

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1.7k

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DESeq2 NanoStringDiff limma

2.3 years ago pg45863 ▴ 10

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1.1k

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by Aleksandra • 0

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791

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NanoStringDiff

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by Paraskevi • 0

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869

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DifferentialExpression NanoStringDiff

3.7 years ago sanrie10 • 0

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2.2k

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limma edgeR DESeq2 NanoStringDiff

updated 4.0 years ago by James W. MacDonald 68k • written 4.0 years ago by reberya • 0

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Nan NanoStringDiff

4.2 years ago choijamts • 0

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2.5k

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NanoStringDiff NanoString nCounter DE analysis

updated 22 months ago by georgersmith • 0 • written 6.1 years ago by lim6432 ▴ 60

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NanoStringDiff

4.5 years ago YM • 0

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1.3k

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Bioconductor Transcriptomics NanoStringDiff

updated 4.8 years ago by Laurent Gatto 1.6k • written 4.8 years ago by Pedro ▴ 10

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NanoStringDiff

5.6 years ago stephen.pollo • 0

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NanoStringDiff GLM Gene expression

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by Guillaume Robert • 0

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NanoStringDiff

updated 19 months ago by pjanas • 0 • written 6.3 years ago by noelleenright ▴ 10

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nanostringdiff nanostring NanoStringDiff

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by casey.rimland ▴ 170

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.1 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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