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NanoStringDiff
•
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0
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replies
2.1k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
2.4 years ago
pg45863
▴ 10
0
votes
2
replies
1.8k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
2.5 years ago
pg45863
▴ 10
0
votes
1
reply
1.1k
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
Aleksandra
• 0
0
votes
2
replies
841
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
Paraskevi
• 0
0
votes
0
replies
937
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
3.9 years ago
sanrie10
• 0
5
votes
7
replies
2.4k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
reberya
• 0
3
votes
2
replies
1.5k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
4.3 years ago
choijamts
• 0
3
votes
6
replies
2.6k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 2.0 years ago by
georgersmith
• 0 • written 6.3 years ago by
lim6432
▴ 60
0
votes
0
replies
995
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
4.6 years ago
YM
• 0
1
vote
1
reply
1.3k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 5.0 years ago by
Laurent Gatto
1.6k • written 5.0 years ago by
Pedro
▴ 10
1
vote
7
replies
1.6k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
5.8 years ago
stephen.pollo
• 0
0
votes
2
replies
1.3k
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.9k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 21 months ago by
pjanas
• 0 • written 6.5 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.8k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 7.4 years ago by
James W. MacDonald
68k • written 7.4 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.7k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
8.3 years ago
c.kohler
• 0
15 results • Page
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Answer: After running samtools, the featureCounts command crashed.
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Kevin Blighe
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Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Kevin Blighe
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Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
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Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
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Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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