Bioconductor PCAtools

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2.4k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.0 years ago Alan • 0

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3.5k

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ellipse RNAseq PCAtools

updated 12 months ago by CP • 0 • written 2.9 years ago by elizabethe819 • 0

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340

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edgeR PCAtools

updated 26 days ago by Gordon Smyth 50k • written 28 days ago by Fabian • 0

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3.2k

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biplot PCA RNASeq PCAtools

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by mschmidt ▴ 10

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2.6k

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PCAtools

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.3 years ago by Terra • 0

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830

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PCAtools

3.1 years ago luca.s ▴ 50

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1.5k

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EDA pcaExplorer PCAtools PCA

updated 2.4 years ago by Miguel ▴ 10 • written 3.7 years ago by k.vitting.seerup ▴ 120

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1.4k

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PCATools

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by oakhamwolf • 0

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938

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illumina PCAtools PCA

updated 17 months ago by Kevin Blighe ★ 3.9k • written 17 months ago by ilaria.debenedictis • 0

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1.1k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 15 months ago by Kevin Blighe ★ 3.9k • written 15 months ago by M Tuhin • 0

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1.7k

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PCAtools biplot DESeq2 RNASeq PCA

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by ecg1g15 ▴ 20

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237

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DESeq2 RSTUDIO PCAtools

updated 1 day ago by swbarnes2 ★ 1.3k • written 2 days ago by Aaliya • 0

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DESeq2 PCAtools

updated 22 hours ago by JKim • 0 • written 1 day ago by Aaliya • 0

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849

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PCAtools bioconductor

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by pterry • 0

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1.1k

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

15 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0