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Parallel
•
reset
2
votes
3
replies
2.8k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
6.9 years ago
davide risso
▴ 950
1
vote
5
replies
2.4k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
eggrandio
• 0
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
rna seq
▴ 90
2
votes
10
replies
2.1k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
6.8 years ago • updated 6.7 years ago
felix.ernst
• 0
6
votes
12
replies
1.9k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
5.3 years ago
foehn
▴ 100
7
votes
4
replies
1.7k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
gabriel.hoffman
▴ 110
0
votes
3
replies
1.7k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
8.5 years ago
Neel Aluru
▴ 460
0
votes
4
replies
1.6k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
symbiologist
• 0
1
vote
6
replies
1.6k
views
Multithreading problems with qalign
quasr
parallel
updated 7.5 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.5 years ago by
kirt.onthank
• 0
3
votes
3
replies
1.6k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
alserg
▴ 260
1
vote
1
reply
1.5k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
maltethodberg
▴ 180
1
vote
0
replies
1.4k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.4 years ago
s.munster
▴ 40
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.4 years ago
ben.ward
▴ 30
1
vote
1
reply
1.4k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.4 years ago by
Rory Stark
★ 5.2k • written 3.4 years ago by
Victor
• 0
3
votes
4
replies
1.4k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 2.4 years ago by
Rory Stark
★ 5.2k • written 2.7 years ago by
eggrandio
• 0
2
votes
4
replies
1.4k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 8.4 years ago by
andrea.rau
▴ 80 • written 8.4 years ago by
Richard Yanicky
▴ 10
0
votes
1
reply
1.3k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.2 years ago
Martin Morgan
25k
4
votes
1
reply
1.3k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Lucas Schiffer
▴ 240
0
votes
0
replies
1.2k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.2 years ago
genomic8328
▴ 10
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.3 years ago
rna seq
▴ 90
0
votes
1
reply
1.2k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
dan.gatti
• 0
0
votes
1
reply
1.2k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
1
vote
1
reply
1.0k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 9.6 years ago by
Valerie Obenchain
★ 6.8k • written 9.6 years ago by
affennacken
• 0
0
votes
1
reply
987
views
DiffBind count warning
diffbind
parallel
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
ghosos
• 0
0
votes
1
reply
984
views
Running limma in parallel
parallel
R
limma
EWAS
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Lorenzo
• 0
0
votes
0
replies
613
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
22 months ago
ZheFrench
▴ 60
0
votes
1
reply
541
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
4.5 years ago
ieuangw
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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