Bioconductor Proteomics

Showing : Proteomics • reset

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197

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

7 weeks ago Peter Hickey ▴ 740

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191

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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230

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Bioconductor Proteomics

5 months ago Joshua • 0

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718

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Proteomics proDA MultipleComparison

8 months ago • updated 7 months ago t.b.n.nguyen-9 • 0

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443

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Proteomics DifferentialRegulation limma

8 months ago svlachavas ▴ 830

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725

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RforProteomics Proteomics ProteomicsWorkflow

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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596

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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767

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Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 11 months ago by nkvnambiar • 0

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1.8k

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Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

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3.8k

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Proteomics NPX limma

updated 3 months ago by briankleiboeker • 0 • written 3.1 years ago by r.i.s.alnuwaysir ▴ 10

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2.2k

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mass spectrometry proteomics metabolomics Tutorial

written 3.5 years ago by Johannes Rainer ★ 2.0k

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1.4k

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RNAseq deseq2 proteomics transcriptomics workshop News

written 5.2 years ago by Laurent Gatto 1.6k

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2.9k

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differential expression proteomics

updated 8 months ago by ATpoint ★ 4.0k • written 6.3 years ago by cardin.julie • 0

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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