Showing : RBGL • reset
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Removing edges from a complete graph to make it a planar maximally filtered graph
RBGL
2.8 years ago jackson0696 • 0
2
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4
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5.2k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 20 months ago by ▴ 10 • written 3.8 years ago by • 0
1
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2
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1.1k
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Unable to install RBGL in Bioconductor 3.10 release
rbgl bh
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 90
2
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4
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2.4k
views
Problems installing RBGL in R
rbgl r package problem
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 20
1
vote
4
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1.4k
views
Non-Redundant Edges in Connected Components
RBGL
updated 6.6 years ago by 16k • written 6.6 years ago by ★ 1.5k
2
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11
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2.4k
views
RBGL installation error
rbgl
8.6 years ago Julian Gehring ★ 1.3k
3
votes
2
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2.8k
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Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.7 years ago by ★ 3.0k • written 8.7 years ago by ▴ 150
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1
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1.2k
views
Problem installing RBGL
rbgl boost
8.7 years ago tzintzuni • 0
1
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1
reply
2.2k
views
Installation error RBGL 1.42
software error installation RBGL compilation error linux cluster
9.9 years ago agroff • 0
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6
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3.8k
views
Directed MST (Edmond's Algorithm)
GO graph RBGL GO graph RBGL
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ▴ 90
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2
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1.4k
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Issues while installing RBGL package
RBGL RBGL
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 10
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0
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1.2k
views
changes to RBGL
graph RBGL graph RBGL
12.5 years ago Vincent J. Carey, Jr. 6.7k
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5
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2.2k
views
'citation("RBGL")' command produces package not found error
RBGL RBGL
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 30
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1
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1.7k
views
deprecated head file for RBGL and compilation failure
graph RBGL PROcess graph RBGL PROcess
updated 12.7 years ago by 6.7k • written 12.7 years ago by ★ 13k
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1
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1.5k
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 13.1 years ago by ▴ 430 • written 13.1 years ago by ▴ 10
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3
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1.9k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 15.0 years ago by ★ 7.4k • written 15.0 years ago by ▴ 630
0
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4
replies
2.1k
views
problem on install package RBGL
RBGL RBGL
updated 15.1 years ago by ▴ 510 • written 15.1 years ago by ▴ 60
0
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0
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1.2k
views
Problem installing RBGL 1.20.0 using Fedora 11 x64 and gcc 4.4.1
RBGL RBGL
15.3 years ago Philipp Antczak ▴ 10
0
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4
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1.7k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 16.2 years ago by ▴ 510 • written 16.2 years ago by ▴ 930
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0
replies
1.2k
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affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
16.5 years ago Nick Henriquez ▴ 20
0
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6
replies
2.2k
views
Problems building RBGL package
RBGL RBGL
16.5 years ago Rasmus Ory Nielsen ▴ 50
0
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2
replies
1.3k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 16.5 years ago by 67k • written 16.5 years ago by ▴ 30
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0
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1.1k
views
Problems with k-cliq definition and calculations using RBGL package
Proteomics graph RBGL Proteomics graph RBGL
17.1 years ago Chanchal Kumar ▴ 130
0
votes
14
replies
2.9k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 17.2 years ago by ▴ 170 • written 17.2 years ago by ▴ 260
0
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3
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2.2k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 80
0
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0
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1.3k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.7 years ago stephen edwards ▴ 10
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0
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1.2k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.8 years ago Dick Beyer ★ 1.4k
0
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2
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1.8k
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can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.9 years ago Mark W Kimpel ▴ 830
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1
reply
1.3k
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Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.9 years ago by 67k • written 17.9 years ago by ▴ 300
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4
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1.6k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.9 years ago by ★ 13k • written 17.9 years ago by ▴ 830
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6
replies
1.8k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 310
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2
replies
1.7k
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.0 years ago by 67k • written 18.0 years ago by ▴ 890
0
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11
replies
3.0k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 18.0 years ago by ▴ 10 • written 18.0 years ago by ★ 2.2k
0
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0
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961
views
RBGL installation on Ubuntu 6.10
RBGL RBGL
18.0 years ago lgautier@altern.org ▴ 950
0
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5
replies
1.8k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ▴ 890
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3
replies
2.2k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 18.2 years ago by 67k • written 18.2 years ago by ▴ 350
0
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2
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1.2k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 10
0
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1
reply
1.4k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 2.2k
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0
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1.2k
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
18.5 years ago Pedro López Romero ▴ 360
0
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2
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1.5k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
18.5 years ago Kimpel, Mark W ▴ 890
0
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0
replies
861
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph RBGL graph RBGL
18.5 years ago Li.Long@isb-sib.ch ▴ 510
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14
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3.0k
views
RBGL 1.8.1 installation error on linux
Cancer graph RBGL Cancer graph RBGL
updated 18.6 years ago by ▴ 510 • written 18.6 years ago by ▴ 300
0
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0
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1.1k
views
RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
18.6 years ago Seth Falcon ★ 7.4k
0
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1
reply
866
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph RBGL graph RBGL
updated 18.6 years ago by ▴ 50 • written 18.6 years ago by ★ 7.4k
0
votes
1
reply
957
views
RBGL package
RBGL RBGL
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 10
0
votes
0
replies
747
views
Graph Layout
graph RBGL graph RBGL
18.9 years ago Li Long ▴ 120
0
votes
1
reply
1.0k
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 19.0 years ago by 67k • written 19.0 years ago by ▴ 890
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0
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1.3k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
19.2 years ago Shi, Tao ▴ 720
0
votes
6
replies
1.7k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ★ 1.4k
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2
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1.4k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 20.0 years ago by 21k • written 20.0 years ago by ▴ 60
50 results • Page 1 of 1
Recent ...
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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k
Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…
Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10
Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…
Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k
I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200
Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200
Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…
Votes
Comment: Can we get beta values with DMRcate package
Answer: Can we get beta values with DMRcate package
DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)
Answer: Deseq2 Design
Answer: Fold change calculation in Diffbind vs. DESEQ2?
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