Bioconductor RNA-Seq

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7.9k

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deseq2 edgeR rna-seq

updated 4 weeks ago by Elizabeth • 0 • written 8.9 years ago by gthm ▴ 30

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2.3k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by mohammedtoufiq91 ▴ 10

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737

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RNA-seq DESeq2

7 months ago ar14g12 • 0

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199

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DESeq2 PCAplot RNA-Seq DesignModel

updated 1 day ago by Michael Love 42k • written 4 days ago by shaunpeterson • 0

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897

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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371

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rna-seq edgeR

updated 4 weeks ago by Gordon Smyth 50k • written 6 weeks ago by Netanel • 0

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1.7k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by gingergeiger22 • 0

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714

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rna-seq salmon fishpond swish

updated 11 months ago by Michael Love 42k • written 11 months ago by samuelcjx • 0

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699

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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265

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RNA-seq DESeq2

updated 17 days ago by ATpoint ★ 4.1k • written 18 days ago by Reza • 0

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3.6k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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291

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rna-seq duplicateCorrelation limma voom

13 days ago • updated 12 days ago Dylan.Sheerin • 0

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329

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RNA-Seq WGCNA Worms

6 months ago • updated 5 months ago davca • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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727

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noiseq RNA-seq quality control

updated 18 hours ago by baptiste.bidon • 0 • written 4.7 years ago by ag1805x ▴ 80

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921

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correlation pearsoncorrelation rna-seq differential gene expression

updated 5 months ago by ATpoint ★ 4.1k • written 6.1 years ago by saad_k6 • 0

17 results • Page 1 of 1

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Comment: recount3 problem downloading data from source sra by PABLO ANTONIO • 0

Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…

Comment: seqlevelsStyle() not working by websterdelacruz2087055 • 0

Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…

Comment: slingshot: error with plot3d.SlingshotDataSet by Happiness • 0

Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by mohammedtoufiq91 ▴ 10

https://support.bioconductor.org/u/5106/ thank you very much.

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Answer: recount3 problem downloading data from source sra

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data

Comment: Ensembl plants at annotationHub?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10