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RNASeqRData
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reset
1
vote
4
replies
1.5k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.1 years ago
faiza
• 0
1
vote
3
replies
1.2k
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
yuhang
• 0
1
vote
4
replies
2.5k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
752
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
3.3 years ago
marymshahi2021
• 0
0
votes
1
reply
977
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 3.7 years ago by
Michael Love
43k • written 3.7 years ago by
Hannah
• 0
0
votes
17
replies
4.8k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
beslinail
• 0
1
vote
1
reply
1.2k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.8 years ago by
Gordon Smyth
53k • written 3.8 years ago by
vikycairoli
• 0
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.2 years ago • updated 3.9 years ago
zeegzaag
• 0
0
votes
1
reply
1.2k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 4.7 years ago by
Gordon Smyth
53k • written 4.7 years ago by
Rita
• 0
2
votes
2
replies
3.8k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.8 years ago
Wuschel
▴ 10
0
votes
0
replies
1.2k
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
4.8 years ago
Bogdan
▴ 670
4
votes
4
replies
1.6k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 3.6 years ago by
Michael Love
43k • written 4.8 years ago by
Cihat
• 0
1
vote
5
replies
2.9k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3.1 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
Taufiq
• 0
13 results • Page
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Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsoksocissalpc
• 0
Just as the Genetic Medicine Department carefully investigates rare diseases to improve patient outcomes, selecting the right Pet Treats fo…
Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
TikTsoksocissalpc
• 0
Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…
Comment: p.adjust BH Question
by
TikTsoksocissalpc
• 0
Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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