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RNASeqRData
•
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1
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4
replies
1.5k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.1 years ago
faiza
• 0
1
vote
3
replies
1.1k
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
yuhang
• 0
1
vote
4
replies
2.5k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
739
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
3.2 years ago
marymshahi2021
• 0
0
votes
1
reply
966
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 3.6 years ago by
Michael Love
43k • written 3.6 years ago by
Hannah
• 0
0
votes
17
replies
4.8k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.7 years ago by
Michael Love
43k • written 3.7 years ago by
beslinail
• 0
1
vote
1
reply
1.2k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.7 years ago by
Gordon Smyth
53k • written 3.7 years ago by
vikycairoli
• 0
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.1 years ago • updated 3.9 years ago
zeegzaag
• 0
0
votes
1
reply
1.2k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 4.6 years ago by
Gordon Smyth
53k • written 4.6 years ago by
Rita
• 0
2
votes
2
replies
3.7k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.7 years ago
Wuschel
▴ 10
0
votes
0
replies
1.1k
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
4.8 years ago
Bogdan
▴ 670
4
votes
4
replies
1.6k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 3.5 years ago by
Michael Love
43k • written 4.8 years ago by
Cihat
• 0
1
vote
5
replies
2.8k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3.1 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
Taufiq
• 0
13 results • Page
1 of 1
Recent ...
Replies
Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
Kevin Blighe
★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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