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RNASeqRData
•
reset
1
vote
4
replies
1.2k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
2.3 years ago
faiza
• 0
1
vote
3
replies
922
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 2.3 years ago by
ATpoint
★ 4.7k • written 2.3 years ago by
yuhang
• 0
1
vote
4
replies
2.0k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 2.4 years ago by
ATpoint
★ 4.7k • written 2.4 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
619
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
2.5 years ago
marymshahi2021
• 0
0
votes
1
reply
802
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
Hannah
• 0
0
votes
17
replies
4.1k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
beslinail
• 0
1
vote
1
reply
1.0k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.0 years ago by
Gordon Smyth
52k • written 3.0 years ago by
vikycairoli
• 0
1
vote
2
replies
1.1k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
3.4 years ago • updated 3.1 years ago
zeegzaag
• 0
0
votes
1
reply
1.1k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 3.9 years ago by
Gordon Smyth
52k • written 3.9 years ago by
Rita
• 0
2
votes
2
replies
3.3k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.0 years ago
Wuschel
▴ 10
0
votes
0
replies
946
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
4.0 years ago
Bogdan
▴ 670
4
votes
4
replies
1.4k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 2.7 years ago by
Michael Love
43k • written 4.0 years ago by
Cihat
• 0
1
vote
5
replies
2.5k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 2.3 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
Taufiq
• 0
13 results • Page
1 of 1
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Replies
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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