Bioconductor RNASeqRData

Showing : RNASeqRData • reset

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microRNA gene RNASeqRData edgeR geneontology

2.3 years ago faiza • 0

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922

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find RNASeqRData

updated 2.3 years ago by ATpoint ★ 4.7k • written 2.3 years ago by yuhang • 0

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2.0k

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RNASeqRData TPM

updated 2.4 years ago by ATpoint ★ 4.7k • written 2.4 years ago by prashali.bansal ▴ 10

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619

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RNASeq RNASeqData RNASeqRData

2.5 years ago marymshahi2021 • 0

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802

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RNAseqRData DeSeq2

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by Hannah • 0

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4.1k

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RNASeqRData

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 3.0 years ago by Gordon Smyth 52k • written 3.0 years ago by vikycairoli • 0

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1.1k

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RNASeqRData combat_Seq BatchEffect

3.4 years ago • updated 3.1 years ago zeegzaag • 0

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1.1k

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RNASeqRData limma RNASeq RNASeqR

updated 3.9 years ago by Gordon Smyth 52k • written 3.9 years ago by Rita • 0

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3.3k

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RNASeqRData GO

4.0 years ago Wuschel ▴ 10

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946

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.0 years ago Bogdan ▴ 670

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1.4k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 2.7 years ago by Michael Love 43k • written 4.0 years ago by Cihat • 0

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2.5k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 2.3 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k