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RNASeqRData
•
reset
1
vote
4
replies
1.7k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.3 years ago
faiza
• 0
1
vote
3
replies
1.2k
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
yuhang
• 0
1
vote
4
replies
2.6k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 3.4 years ago by
ATpoint
★ 5.0k • written 3.4 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
786
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
3.4 years ago
marymshahi2021
• 0
0
votes
1
reply
1.0k
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
Hannah
• 0
0
votes
17
replies
5.0k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
beslinail
• 0
1
vote
1
reply
1.3k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.9 years ago by
Gordon Smyth
53k • written 4.0 years ago by
vikycairoli
• 0
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.4 years ago • updated 4.1 years ago
zeegzaag
• 0
0
votes
1
reply
1.3k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 4.8 years ago by
Gordon Smyth
53k • written 4.8 years ago by
Rita
• 0
2
votes
2
replies
4.0k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.9 years ago
Wuschel
▴ 10
0
votes
0
replies
1.2k
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
5.0 years ago
Bogdan
▴ 670
4
votes
4
replies
1.7k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 3.7 years ago by
Michael Love
43k • written 5.0 years ago by
Cihat
• 0
1
vote
5
replies
3.0k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
Taufiq
• 0
13 results • Page
1 of 1
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Replies
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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