Bioconductor RNASeqRData

Showing : RNASeqRData • reset

vote

replies

1.2k

views

microRNA gene RNASeqRData edgeR geneontology

2.4 years ago faiza • 0

vote

replies

957

views

find RNASeqRData

updated 2.4 years ago by ATpoint ★ 4.8k • written 2.4 years ago by yuhang • 0

vote

replies

2.1k

views

RNASeqRData TPM

updated 2.5 years ago by ATpoint ★ 4.8k • written 2.5 years ago by prashali.bansal ▴ 10

votes

replies

640

views

RNASeq RNASeqData RNASeqRData

2.5 years ago marymshahi2021 • 0

votes

835

views

RNAseqRData DeSeq2

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by Hannah • 0

votes

replies

4.3k

views

RNASeqRData

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by beslinail • 0

vote

1.1k

views

RNASeqRData edgeR RNASeqR RNASeqData

updated 3.1 years ago by Gordon Smyth 52k • written 3.1 years ago by vikycairoli • 0

vote

replies

1.2k

views

RNASeqRData combat_Seq BatchEffect

3.5 years ago • updated 3.2 years ago zeegzaag • 0

votes

1.1k

views

RNASeqRData limma RNASeq RNASeqR

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by Rita • 0

votes

replies

3.4k

views

RNASeqRData GO

4.1 years ago Wuschel ▴ 10

votes

replies

968

views

RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.1 years ago Bogdan ▴ 670

votes

replies

1.4k

views

Deseq2 RNASeqRData unbalancedsamplesize

updated 2.8 years ago by Michael Love 43k • written 4.1 years ago by Cihat • 0

vote

replies

2.5k

views

RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 2.4 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by Taufiq • 0

13 results • Page 1 of 1

Recent ...

Replies

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

Votes

Answer: Merging annotation with differential expression output

Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

Awards • All