Bioconductor RNASeqRData

Showing : RNASeqRData • reset

vote

replies

880

views

microRNA gene RNASeqRData edgeR geneontology

19 months ago faiza • 0

vote

replies

727

views

find RNASeqRData

updated 19 months ago by ATpoint ★ 4.2k • written 20 months ago by yuhang • 0

vote

replies

1.5k

views

RNASeqRData TPM

updated 20 months ago by ATpoint ★ 4.2k • written 20 months ago by prashali.bansal ▴ 10

votes

replies

492

views

RNASeq RNASeqData RNASeqRData

21 months ago marymshahi2021 • 0

votes

621

views

RNAseqRData DeSeq2

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by Hannah • 0

votes

replies

3.3k

views

RNASeqRData

updated 2.3 years ago by Michael Love 42k • written 2.3 years ago by beslinail • 0

vote

814

views

RNASeqRData edgeR RNASeqR RNASeqData

updated 2.3 years ago by Gordon Smyth 51k • written 2.3 years ago by vikycairoli • 0

vote

replies

913

views

RNASeqRData combat_Seq BatchEffect

2.7 years ago • updated 2.4 years ago zeegzaag • 0

votes

909

views

RNASeqRData limma RNASeq RNASeqR

updated 3.2 years ago by Gordon Smyth 51k • written 3.2 years ago by Rita • 0

votes

replies

2.8k

views

RNASeqRData GO

3.3 years ago Wuschel ▴ 10

votes

replies

772

views

RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.3 years ago Bogdan ▴ 670

votes

replies

1.1k

views

Deseq2 RNASeqRData unbalancedsamplesize

updated 2.1 years ago by Michael Love 42k • written 3.4 years ago by Cihat • 0

vote

replies

2.1k

views

RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 19 months ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by Taufiq • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Votes

A: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: Get the latest gene name from Entrez ID

Get the latest gene name from Entrez ID

Answer: biomaRt not working - lazy table error

Answer: How to do DESeq2 on Kallisto Data

Awards • All