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RNAseq123
•
reset
5
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6
replies
3.0k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.4 years ago
Alan
• 0
1
vote
6
replies
4.0k
views
KEGG enrichment analysis for non model organism
RNAseq123
21 months ago
afsanarupa1
• 0
2
votes
5
replies
1.2k
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 21 months ago by
Gordon Smyth
51k • written 21 months ago by
Istvan Albert
▴ 50
12
votes
4
replies
4.7k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.7 years ago by
Gordon Smyth
51k • written 7.3 years ago by
wd
▴ 30
0
votes
3
replies
1.1k
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 20 months ago by
Michael Love
42k • written 20 months ago by
irish.prg
• 0
1
vote
3
replies
5.0k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 3.7 years ago by
mmicky5050
• 0
0
votes
2
replies
726
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
19 months ago
fatemeh.peimani
• 0
1
vote
2
replies
356
views
Improving the design matrices vignette in RNAseq123
RNAseq123
4 months ago
Lluís Revilla Sancho
▴ 730
1
vote
1
reply
860
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 24 months ago by
ATpoint
★ 4.4k • written 24 months ago by
Mohamed
▴ 30
2
votes
1
reply
1.2k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 2.2 years ago by
Gordon Smyth
51k • written 2.2 years ago by
Mikołaj Mierzejewski
• 0
0
votes
1
reply
927
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 3.1 years ago by
Kevin Blighe
★ 4.0k • written 3.1 years ago by
kusum
• 0
1
vote
1
reply
1.6k
views
featureCounts running too long
RNAseq123
updated 7 months ago by
difraiadomenico
• 0 • written 3.5 years ago by
demirkalecy
▴ 10
1
vote
1
reply
510
views
Differential gene expression analysis
RNASeqData
RNAseq123
updated 9 months ago by
ATpoint
★ 4.4k • written 9 months ago by
kaurprab
• 0
0
votes
1
reply
1.8k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 22 months ago by
James W. MacDonald
67k • written 22 months ago by
Mohamed
▴ 30
0
votes
0
replies
616
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
3.6 years ago
rpokhre2
• 0
0
votes
0
replies
668
views
Plotting a line plot for genes across 4-species
RNAseq123
2.1 years ago
Mohamed
▴ 30
16 results • Page
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Recent ...
Replies
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
Michael Love
42k
I request the post here, so not a problem.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
micolak0115
• 0
Thanks for the advice Michael. I will try this with my future test datasets.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
micolak0115
• 0
Hi James, I will try to leave only relevant questions on bioconductor forum hereinafter. Thanks for the note. Cheers, Alan
Comment: SingleR Label.Ont
by
Stepah
• 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce
by
Vincent J. Carey, Jr.
6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Votes
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
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Michael Love
42k
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Gordon Smyth
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James W. MacDonald
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