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Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part:
https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts
by
empty_mt
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0
Hi Michael,
My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
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0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files.
I'm able to read in the file…
Comment: DESeq2 interactions
by
Michael Love
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GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site.
I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed
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shepherl
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We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
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