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RUVnormalize
•
reset
1
vote
2
replies
861
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
13 months ago
AZ
▴ 30
0
votes
4
replies
2.2k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
23 months ago • updated 22 months ago
Mohamed
▴ 30
0
votes
1
reply
623
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
5.5 years ago
losik
• 0
0
votes
2
replies
1.0k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.3 years ago by
Dario Strbenac
★ 1.5k • written 6.3 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.8 years ago by
davide risso
▴ 950 • written 6.8 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.8 years ago
Nik Tuzov
▴ 80
2
votes
1
reply
1.3k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 6.9 years ago by
davide risso
▴ 950 • written 6.9 years ago by
manish20072013
• 0
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.8 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.5k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.0 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.3k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.4 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.3k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 8.9 years ago by
laurent.jacob
▴ 10 • written 8.9 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.2k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 8.9 years ago by
laurent.jacob
▴ 10 • written 9.0 years ago by
Dario Strbenac
★ 1.5k
12 results • Page
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Replies
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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