Bioconductor RforProteomics

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DEP missing value imputation proteomics rforproteomics

6.4 years ago • updated 6.2 years ago alex.gos90 ▴ 10

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RforProteomics MSnbase

updated 5.3 years ago by Laurent Gatto 1.6k • written 5.3 years ago by fgol ▴ 10

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prostar proteomics rforproteomics annotationforge

updated 5.9 years ago by Samuel Wieczorek ▴ 10 • written 5.9 years ago by lolli.langan ▴ 20

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msnbase rforproteomics

5.2 years ago fgol ▴ 10

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RforProteomics

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by jb3082 • 0

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Bioc package installation rforproteomics

updated 8.1 years ago by Laurent Gatto 1.6k • written 8.2 years ago by sarahgrogan • 0

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msnbase duplicate rforproteomics

updated 6.3 years ago by Laurent Gatto 1.6k • written 6.3 years ago by joris.vanhoutven ▴ 10

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888

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RforProteomics

3.5 years ago yueli7 ▴ 20

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596

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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963

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error RforProteomics Install

updated 3.4 years ago by Mike Smith ★ 6.5k • written 3.4 years ago by Phoebe • 0

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rforproteomics proteomics msnid msnbase

4.1 years ago daniel.magnus.bader ▴ 40

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RforProteomics Proteomics ProteomicsWorkflow

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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