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S4
•
reset
2
votes
7
replies
2.6k
views
Removing samples from S4 object (in lumi)
lumi
S4
9.2 years ago
Chi Hong
• 0
1
vote
2
replies
726
views
Remove any rows with 0 count in S4
S4
deseq2
updated 5.2 years ago by
swbarnes2
★ 1.3k • written 5.2 years ago by
shintzen
• 0
0
votes
1
reply
1.7k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads
error
as.vector(data)
s4vectors
s4
8.6 years ago
schasse
• 0
15
votes
4
replies
11k
views
How to convert a GRangesList object into a GRanges object?
genomicranges
grangeslist
granges
s4
updated 2.1 years ago by
Hervé Pagès
16k • written 7.9 years ago by
richierocks
▴ 40
2
votes
2
replies
1.2k
views
How to coerce CompressedIntegerList as vector?
s4
coercion
iranges
integerlist
7.7 years ago
jian_liangli
• 0
2
votes
2
replies
1.1k
views
How to detect and replace zero index in IntegerList ?
iranges
integerlist
s4
7.7 years ago
Jurat Shahidin
▴ 80
2
votes
1
reply
990
views
Large Size of R packages containing S4 classes
S4
packages
updated 5.7 years ago by
Michael Lawrence
★ 11k • written 5.7 years ago by
lukaszbednarz
▴ 10
2
votes
2
replies
1.0k
views
SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
brendan.innes
▴ 20
0
votes
2
replies
1.0k
views
Automatically disconnecting database connections stored within an S4 object
DBI
S4
Biobase
updated 20 months ago by
Hervé Pagès
16k • written 20 months ago by
sandmann.t
▴ 70
7
votes
7
replies
5.1k
views
convert S4 DataFrame of Rle objects to sparse matrix
s4
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Koen Van den Berge
▴ 180
2
votes
4
replies
789
views
Does my package fit into bioconductor (and further advice)?
calcium imaging
imaging
s4
updated 4.1 years ago by
shepherl
3.8k • written 4.1 years ago by
muad.abdelhay
▴ 10
0
votes
1
reply
834
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
lklei001
• 0
3
votes
2
replies
981
views
Proper way to deprecate an S4 generic
s4
generic
updated 5.2 years ago by
Marcel Ramos
690 • written 5.2 years ago by
Michael Steinbaugh
▴ 90
2
votes
2
replies
1.0k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4
dataframe
left_join
merge
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
2
votes
2
replies
651
views
Test wether bioconductor class is linear or rectangular in base R
class
S4
updated 4.2 years ago by
Hervé Pagès
16k • written 4.2 years ago by
Teun van den Brand
• 0
0
votes
3
replies
1.1k
views
How to clear a cached S4 method
devtools
S4
methods
cache
5.4 years ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
1.3k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
7.8 years ago
anara92
• 0
17 results • Page
1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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