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Showing :
S4Vectors
•
reset
3
votes
8
replies
3.3k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors
Matrix
8.9 years ago
peter.kharchenko
▴ 30
0
votes
5
replies
2.2k
views
Using S4Vectors within a package
Package
s4vectors
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
my4
▴ 10
0
votes
1
reply
1.2k
views
DataFrame showAsCell function
s4vectors
updated 9.3 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
vedran.franke
• 0
5
votes
5
replies
2.2k
views
How to extract out wanted IntegerList more elegantly from nested list?
r
s4vectors
integerlist
iranges
updated 9.3 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
jian_liangli
• 0
2
votes
1
reply
1.2k
views
Question about parallel manipulation on CharacterList objects
s4vectors
IRanges
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
li lilingdu
▴ 450
3
votes
5
replies
2.4k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion
data manipulation
s4vectors
List
9.5 years ago
Jurat Shahidin
▴ 80
0
votes
0
replies
1.8k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
9.5 years ago
anara92
• 0
3
votes
2
replies
2.1k
views
Proper way to read in a DataFrame with CharacterList columns that was saved to a text file
s4vectors
genomicranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
Leonardo Collado Torres
★ 1.1k
3
votes
1
reply
1.4k
views
shiftApply verbosity (in ChIPQC)
ChIPQC
s4vectors
updated 9.7 years ago by
Thomas Carroll
▴ 420 • written 9.9 years ago by
liz.ingsimmons
▴ 140
2
votes
2
replies
2.4k
views
Problem when installing DESeq on MAC OS X
s4vectors
mac os x
deseq
updated 9.9 years ago by
Wolfgang Huber
★ 13k • written 9.9 years ago by
yoonsora
• 0
2
votes
3
replies
2.1k
views
Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage
s4vectors
seqlengths
9.9 years ago
liz.ingsimmons
▴ 140
1
vote
1
reply
6.0k
views
Error trying to install GenomicRanges
cummerbund
rtracklayer
genomicranges
s4vectors
iranges
updated 10.0 years ago by
Mike Smith
★ 6.6k • written 10.0 years ago by
Kevin
• 0
0
votes
1
reply
1.8k
views
simpleRNASeq stopped running (related to S4 vectors?)
simplernaseq
easyrnaseq
s4vectors
updated 10.1 years ago by
Nicolas Delhomme
▴ 320 • written 10.1 years ago by
michael.dhar
• 0
1
vote
2
replies
4.1k
views
Error in installation S4Vectors package
s4vectors
updated 10.1 years ago by
Dan Tenenbaum
★ 8.2k • written 10.1 years ago by
jial2
• 0
0
votes
1
reply
2.2k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads
error
as.vector(data)
s4vectors
s4
10.3 years ago
schasse
• 0
0
votes
1
reply
2.4k
views
How to install S4Vector package in R v 3.1.1?
s4vectors
R 3.1.1
updated 10.6 years ago by
Hervé Pagès
16k • written 10.6 years ago by
colaneri
▴ 30
1
vote
4
replies
2.1k
views
IRanges missing S4Vectors_defines.h
iranges
s4vectors
updated 10.7 years ago by
Hervé Pagès
16k • written 10.7 years ago by
Nathan Sheffield
▴ 10
1
vote
2
replies
1.7k
views
Error running table() on an RleList returned by coverage()
GenomicRanges
S4Vectors
updated 11.3 years ago by
Hervé Pagès
16k • written 11.3 years ago by
Rory Stark
★ 5.2k
68 results • Page
2 of 2
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Replies
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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