Bioconductor STRINGTIE

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5.8k

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ballgown stringtie

updated 7.2 years ago by linda.boshans • 0 • written 8.2 years ago by bhawley1991 ▴ 10

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2.5k

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ballgown biologicalreplicates technical replicates stringtie

updated 6.5 years ago by Alyssa Frazee ▴ 210 • written 7.2 years ago by linda.boshans • 0

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1.8k

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ballgown stringtie

updated 7.8 years ago by Jeff Leek ▴ 650 • written 7.8 years ago by alva.james • 0

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1.4k

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tximport stringtie RNA-seq analysis

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by Mithil Gaikwad • 0

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1.4k

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ballgown StringTie galaxy rnaseq

updated 23 months ago by Kevin Blighe ★ 3.9k • written 3.8 years ago by lakshmi9c • 0

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3.5k

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deseq2 StringTie RNA-seq normalisation

updated 4.4 years ago by Michael Love 42k • written 4.4 years ago by JindrichK • 0

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1.5k

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tximport stringtie

6.2 years ago • updated 6.0 years ago matrs ▴ 10

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1.4k

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ballgown stringtie voom limma differential gene expression rnaseq

updated 7.6 years ago by Alyssa Frazee ▴ 210 • written 7.6 years ago by jcalis ▴ 10

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731

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DESeq2 TPM rawcounts StringTie

updated 21 months ago by Michael Love 42k • written 21 months ago by snijesh ▴ 20

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1.4k

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stringtie illumina hisat2 ballgown

updated 6.5 years ago by k.vitting.seerup ▴ 120 • written 6.5 years ago by amy16 • 0

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4.4k

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prepDE STRINGTIE deseq2

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by Nancy ▴ 10

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1.8k

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featureCount rna-seq gene_id re_gene_id stringtie

updated 5.3 years ago by Wei Shi ★ 3.6k • written 5.3 years ago by IRAIA.MAIALEN • 0

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1.4k

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Ballgown Stringtie DEG rnaseq

6.0 years ago vharshavardhanan • 0

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1.3k

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isoform RNA-seq hisat2 stringtie ballgown

3.6 years ago ra711 • 0

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302

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stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by sumitra.20 • 0

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1.8k

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hisat2 stringtie ballgown RNAseq

6.3 years ago • updated 6.0 years ago Nancy ▴ 10

16 results • Page 1 of 1

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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…

Comment: European Bioconductor Conference 2023 planning by angelaesper43 • 0

@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …

Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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