Bioconductor TxDb.Hsapiens.UCSC.hg38.knownGene

Showing : TxDb.Hsapiens.UCSC.hg38.knownGene • reset

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

20 months ago • updated 19 months ago davidhillis • 0

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893

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

22 months ago Lluís Revilla Sancho ▴ 760

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4.4k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.7 years ago Theresa ▴ 20

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.9 years ago by Hervé Pagès 16k • written 2.9 years ago by BioEpi • 0

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.7 years ago by James W. MacDonald 67k • written 3.7 years ago by lukijanczukpawel • 0

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.7 years ago by kayla.interdonato ▴ 160 • written 4.7 years ago by jam526 • 0

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.8 years ago by shepherl 4.1k • written 4.8 years ago by bernatgel ▴ 150

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957

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.8 years ago by kayla.interdonato ▴ 160 • written 4.8 years ago by Kamil Slowikowski ▴ 30

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3.2k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by Aditya ▴ 160

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.5 years ago Ruichao.Zeng ▴ 20

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 6.9 years ago by Simon Anders ★ 3.8k • written 6.9 years ago by Mark Dunning ★ 1.1k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

7.1 years ago Leonardo Collado Torres ★ 1.1k

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2.9k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

8.1 years ago shilin.zhao ▴ 40

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.6 years ago enricoferrero ▴ 660

14 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k