Showing : cdf • reset
6
votes
2
replies
1.9k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 9.6 years ago by 50k • written 9.8 years ago by ★ 13k
3
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7
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4.3k
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miRNA microarray analysis
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updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 10
2
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3
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1.8k
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i need AGI code as my probset
affy cdf probe
8.5 years ago • updated 8.3 years ago Angel ▴ 40
2
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4
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2.7k
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makePdInfoPackage for Primeview arrays
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updated 10.9 years ago by ★ 3.9k • written 10.9 years ago by ▴ 140
2
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5
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1.2k
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Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy cdf rma
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
2
votes
2
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2.8k
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Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy cdf .cel
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
2
votes
2
replies
1.3k
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problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.4 years ago by 65k • written 9.4 years ago by • 0
1
vote
3
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3.0k
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How to analyse clariom d human files
limma pdinfobuilder affy cdf
7.2 years ago yusuf.khan ▴ 10
1
vote
4
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2.9k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 10.3 years ago by 65k • written 10.4 years ago by ★ 13k
1
vote
1
reply
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
1
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4
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4.7k
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Affymetrix Human Gene 1.0 ST Array
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16.0 years ago Hans-Ulrich Klein ▴ 330
1
vote
1
reply
1.1k
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altcdfenvs get wrapCdfEnvAffy error
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updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 930
1
vote
0
replies
789
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Binary CEL and CDF files
cdf affy cdf affy
20.1 years ago PARK,CHRISTOPHER CHANGSUN ▴ 50
1
vote
0
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894
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RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
15.2 years ago Nishant Gopalakrishnan ▴ 340
1
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5
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1.8k
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CDf files in R
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updated 4.5 years ago by 65k • written 4.5 years ago by • 0
0
votes
0
replies
606
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promotor tilingArray
cdf probe cdf probe
17.8 years ago Ron Ophir ▴ 270
0
votes
0
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1.1k
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Error with CDF environment when using combineAffyBatch of pac kage matchprobes - mas5
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18.2 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
0
replies
767
views
alt cdf env probe index config problem
GO cdf probe affy GO cdf probe affy
19.5 years ago Rhonda DeCook ▴ 90
0
votes
0
replies
865
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PLIER affinities redux
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18.6 years ago Matthew Hannah ▴ 940
0
votes
2
replies
1.1k
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 18.7 years ago by ▴ 120 • written 18.7 years ago by ★ 13k
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 100
0
votes
0
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1.2k
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Release of Bioconductor 1.3
Microarray Annotation Normalization GO Classification Regression Cancer hgu95a cdf probe
20.6 years ago A.J. Rossini ▴ 810
0
votes
0
replies
806
views
QC report
cdf affy affyQCReport cdf affy affyQCReport
15.8 years ago Yisong Zhen ▴ 10
0
votes
8
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1.7k
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questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 160
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 15.3 years ago by ▴ 30 • written 15.3 years ago by ▴ 170
0
votes
2
replies
1.3k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.2 years ago by ★ 1.2k • written 15.2 years ago by ▴ 20
0
votes
0
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1.0k
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Bioconductor
cdf affy affyPara cdf affy affyPara
13.6 years ago Valerie Obenchain ★ 6.8k
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 20
0
votes
2
replies
1.5k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 13.5 years ago by ▴ 120 • written 13.5 years ago by ▴ 10
0
votes
0
replies
1.5k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
13.4 years ago Roman ▴ 20
0
votes
0
replies
748
views
Pd info package affy 10K array
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15.9 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
751
views
problems with pdInfoBuilder
cdf pdInfoBuilder cdf pdInfoBuilder
updated 16.2 years ago by 65k • written 16.2 years ago by ▴ 10
0
votes
0
replies
768
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Réf. : Re: Missing probesets ~ commentary from the cheap seats ...
cdf probe cdf probe
19.0 years ago Malick.PAYE@eu.biomerieux.com ▴ 110
0
votes
0
replies
771
views
How to remove some probes from one probeset in the begining?
cdf probe cdf probe
16.2 years ago pkuonline ▴ 30
0
votes
0
replies
1.8k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.8 years ago Min Wook Kim ▴ 20
0
votes
3
replies
1.3k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 40
0
votes
3
replies
1.2k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
19.8 years ago Mayte Suarez-Farinas ▴ 300
0
votes
8
replies
2.4k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 290
0
votes
1
reply
1.2k
views
Error: cannot allocate vector of size 618.0 Mb
Annotation cdf Annotation cdf
updated 11.5 years ago by ▴ 580 • written 11.5 years ago by ▴ 20
0
votes
3
replies
1.4k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 11.0 years ago by ▴ 60 • written 11.0 years ago by ▴ 870
0
votes
5
replies
1.8k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 11.0 years ago by ▴ 60 • written 11.0 years ago by ▴ 870
0
votes
2
replies
1.1k
views
Rat St gene array 2.0
Cancer cdf Cancer cdf
updated 10.9 years ago by ▴ 10 • written 10.9 years ago by ▴ 170
0
votes
5
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1.7k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
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10.8 years ago Alan Smith ▴ 150
0
votes
9
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2.7k
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frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.8 years ago by ▴ 830 • written 9.8 years ago by ★ 13k
0
votes
5
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2.0k
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Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 13k
0
votes
0
replies
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.1 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
979
views
Affymetrix exon arrays?
Normalization Cancer Breast cdf affy PROcess Normalization Cancer Breast cdf affy
updated 17.6 years ago by ▴ 20 • written 17.6 years ago by ▴ 310
0
votes
1
reply
764
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Affy Human Gene ST1.0 cdf?
cdf cdf
updated 16.4 years ago by 65k • written 16.4 years ago by ▴ 320
0
votes
2
replies
1.1k
views
Affy and Custom CDF files
cdf probe cdf probe
updated 21.2 years ago by ★ 2.3k • written 21.2 years ago by ▴ 70
0
votes
2
replies
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views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 12.3 years ago by 65k • written 12.3 years ago by ▴ 630
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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