Showing : cn.MOPS • reset
1
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2
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717
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" 'end' must be >= 'start' - 1" error in cn.mops
cn.mops
20 months ago User000 • 0
0
votes
3
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1.2k
views
cn.mops segmentation error
cn.mops
updated 21 months ago by • 0 • written 22 months ago by ▴ 40
0
votes
1
reply
563
views
Suspected bug on GetReadCountsFromBAM in cn.mops
cn.mops
3.8 years ago asafpr • 0
0
votes
1
reply
732
views
How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops panelcn.mops CNV detection CNV
4.2 years ago metzgerlukas • 0
0
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0
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474
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cn.mops : undef chromsome using data matrix as input
CNV cn.mops undef
4.2 years ago ankita.narang86 • 0
0
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0
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755
views
cn.MOPS output - mean/median of what?
cn.MOPS CNV copy number
4.3 years ago liorglic ▴ 10
0
votes
1
reply
777
views
CNV plot using cn.mops
cnv R plot visualization cn.mops software error
4.4 years ago ari • 0
0
votes
0
replies
628
views
ChrM causes "missing value where TRUE/FALSE needed" error
cn.mops
4.5 years ago millerh1 ▴ 10
0
votes
1
reply
864
views
Error using singlecn.mops for cnv detection in WGS data
cnv cn.mops singlecn.mops
updated 2.2 years ago by • 0 • written 4.5 years ago by • 0
0
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2
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1.1k
views
problem about using cn.mops
cn.mops
updated 3.0 years ago by • 0 • written 4.9 years ago by • 0
0
votes
3
replies
976
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
1
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4
replies
944
views
cn.mops on CRAM files
cn.mops
updated 5.0 years ago by ▴ 540 • written 5.0 years ago by • 0
2
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3
replies
1.3k
views
mosdepth output into cn.mops?
cn.mops
updated 5.1 years ago by ▴ 540 • written 5.1 years ago by • 0
0
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0
replies
669
views
cn.mops normalization of multiple samples
cn.mops
5.3 years ago DannyM • 0
0
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0
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962
views
Mean and median values in cn.mops cnvs output
cn.mops referencecn.mops
updated 5.4 years ago by 0 • written 5.4 years ago by • 0
0
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3
replies
953
views
tumor vs control: multiple samples
cn.mops
5.4 years ago DannyM • 0
0
votes
1
reply
978
views
cn.MOPS: Error in getReadCountsFromBAM
cn.mops
5.7 years ago laurabuggiotti • 0
0
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0
replies
970
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
5.8 years ago Cased • 0
0
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0
replies
679
views
How to interpret out of referencecn.mops
referencecn.mops cn.mops
5.8 years ago eddie.kaho.ho • 0
0
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18
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4.5k
views
cn.MOPs: Error in value[[3L]](cond) :
cn.mops
updated 5.9 years ago by ▴ 540 • written 5.9 years ago by • 0
2
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3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.9 years ago by ▴ 540 • written 5.9 years ago by • 0
0
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1
reply
881
views
cn.mops: interpreting output when returnPosterior=TRUE
cn.mops
updated 6.1 years ago by ▴ 540 • written 6.1 years ago by • 0
0
votes
2
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1.0k
views
best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
cn.mops normalization
updated 14 months ago by • 0 • written 6.2 years ago by • 0
1
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2
replies
1.8k
views
cn.MOPS error: Error in if (WL >= sl[i]) { : missing value where TRUE/FALSE needed
cn.mops
6.2 years ago hugo.magalhaes ▴ 10
0
votes
1
reply
1.0k
views
Inconsistent Warning: GRanges out of bounds
cn.mops granges trim Genomicranges-method
6.3 years ago znl207 • 0
0
votes
1
reply
970
views
Error with plotting with target sequencing data
cn.mops
updated 6.3 years ago by ▴ 540 • written 6.3 years ago by • 0
2
votes
6
replies
2.6k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error cn.mops
updated 10 weeks ago by • 0 • written 6.3 years ago by ▴ 10
0
votes
5
replies
1.5k
views
Error when use getSegmentReadCountsFromBAM
targeted sequencing cn.mops
6.3 years ago jinxinhao1988 • 0
0
votes
2
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1.5k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops cnv
updated 6.4 years ago by ▴ 540 • written 6.4 years ago by ▴ 20
0
votes
4
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1.3k
views
Is cn.mops can be used for detecting CNV for targeted sequencing of 8M region
cn.mops
updated 6.4 years ago by ▴ 540 • written 6.4 years ago by • 0
5
votes
7
replies
1.5k
views
about the runs with cn.mops
cn.mops referencecn.mops
6.7 years ago Bogdan ▴ 670
1
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2
replies
1.6k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 6.8 years ago by ▴ 540 • written 6.8 years ago by • 0
0
votes
1
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1.1k
views
getReadCountsFromBAM including bed information
cn.mops bed files getReadCountsFromBAM
6.9 years ago Pau Marc Muñoz Torres ▴ 20
5
votes
9
replies
1.8k
views
reduce function after combining 2 GRanges objects from cn.mops output
GRanges cn.mops
updated 6.9 years ago by ★ 11k • written 6.9 years ago by ▴ 110
2
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1
reply
1.0k
views
How to combine CNVDetectionResult objects in cn.mops package
cn.mops
updated 6.9 years ago by ▴ 540 • written 6.9 years ago by ▴ 110
0
votes
2
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1.1k
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getReadCountsFromBAM and paired-end reads
cn.mops
6.9 years ago Alexandre Kuhn ▴ 20
4
votes
2
replies
1.4k
views
using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
6.9 years ago Bogdan ▴ 670
0
votes
2
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1.3k
views
Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 7.0 years ago by ▴ 540 • written 7.0 years ago by • 0
0
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4
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1.3k
views
cn.mops encounter negative width problem
cn.mops referencecn.mops
updated 7.1 years ago by ▴ 540 • written 7.1 years ago by • 0
3
votes
1
reply
1.2k
views
R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 7.1 years ago by ▴ 540 • written 7.3 years ago by ▴ 670
3
votes
5
replies
1.6k
views
R code for cn.mops
cn.mops
updated 14 months ago by • 0 • written 7.3 years ago by ▴ 670
1
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1
reply
979
views
which cn.mops function should I use
cn.mops
updated 7.1 years ago by ▴ 540 • written 7.1 years ago by • 0
0
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1
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1.1k
views
cn.mops returning only "NA" as copy number
cn.mops
updated 7.2 years ago by ▴ 540 • written 7.2 years ago by • 0
0
votes
2
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1.4k
views
about an error in cn.MOPS : could not find symbol "recursive" in environment of the generic function
cn.MOPS
7.3 years ago Bogdan ▴ 670
4
votes
3
replies
1.3k
views
parameter "refSeqName" in function "getReadCountsFromBAM"
cn.mops
updated 7.3 years ago by ▴ 540 • written 7.7 years ago by • 0
0
votes
4
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1.4k
views
Call CNV in population with large depth variance
cn.mops
updated 7.4 years ago by ▴ 540 • written 7.4 years ago by • 0
4
votes
9
replies
2.4k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops cnv targeted sequencing
updated 7.4 years ago by ▴ 540 • written 7.4 years ago by ▴ 20
0
votes
1
reply
854
views
Input (X) data type is not numeric if read from GRanges obj
cn.mops
updated 7.4 years ago by ▴ 540 • written 7.4 years ago by • 0
1
vote
2
replies
1.2k
views
cn.mops: NA in the output of referencecn.mops
cn.mops referencecn.mops
updated 7.5 years ago by ▴ 540 • written 7.5 years ago by ▴ 90
0
votes
2
replies
1.1k
views
about cn.MOPS: paired vs unpaired
cn.mops
updated 7.5 years ago by ▴ 540 • written 7.5 years ago by ▴ 670
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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