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cn.mops
•
reset
1
vote
2
replies
702
views
" 'end' must be >= 'start' - 1" error in cn.mops
cn.mops
19 months ago
User000
• 0
0
votes
3
replies
1.2k
views
cn.mops segmentation error
cn.mops
updated 20 months ago by
gpovysil
• 0 • written 21 months ago by
jacorvar
▴ 40
0
votes
1
reply
559
views
Suspected bug on GetReadCountsFromBAM in cn.mops
cn.mops
3.7 years ago
asafpr
• 0
0
votes
1
reply
721
views
How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops
panelcn.mops
CNV detection
CNV
4.2 years ago • updated 4.1 years ago
metzgerlukas
• 0
0
votes
0
replies
464
views
cn.mops : undef chromsome using data matrix as input
CNV
cn.mops
undef
4.2 years ago
ankita.narang86
• 0
0
votes
0
replies
746
views
cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
4.2 years ago
liorglic
▴ 10
0
votes
1
reply
765
views
CNV plot using cn.mops
cnv
R
plot visualization
cn.mops
software error
4.4 years ago
ari
• 0
0
votes
0
replies
618
views
ChrM causes "missing value where TRUE/FALSE needed" error
cn.mops
4.4 years ago
millerh1
▴ 10
0
votes
1
reply
848
views
Error using singlecn.mops for cnv detection in WGS data
cnv
cn.mops
singlecn.mops
updated 2.2 years ago by
SicilianSilicon
• 0 • written 4.5 years ago by
frez111
• 0
0
votes
2
replies
1.1k
views
problem about using cn.mops
cn.mops
updated 2.9 years ago by
R
• 0 • written 4.8 years ago by
hzaujsxu
• 0
0
votes
3
replies
965
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops
cn.mops
error
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
s1812756
• 0
1
vote
4
replies
927
views
cn.mops on CRAM files
cn.mops
updated 4.9 years ago by
Günter Klambauer
▴ 540 • written 4.9 years ago by
dsilencio
• 0
2
votes
3
replies
1.2k
views
mosdepth output into cn.mops?
cn.mops
updated 5.1 years ago by
Günter Klambauer
▴ 540 • written 5.1 years ago by
Philipp Bayer
• 0
0
votes
0
replies
658
views
cn.mops normalization of multiple samples
cn.mops
5.2 years ago
DannyM
• 0
0
votes
0
replies
940
views
Mean and median values in cn.mops cnvs output
cn.mops
referencecn.mops
updated 5.3 years ago by
Bioconductor Community
0 • written 5.4 years ago by
kaushalm
• 0
0
votes
3
replies
942
views
tumor vs control: multiple samples
cn.mops
5.4 years ago • updated 5.3 years ago
DannyM
• 0
0
votes
1
reply
964
views
cn.MOPS: Error in getReadCountsFromBAM
cn.mops
5.6 years ago
laurabuggiotti
• 0
0
votes
0
replies
953
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops
dnaseq
bioinformatics
5.7 years ago
Cased
• 0
0
votes
0
replies
666
views
How to interpret out of referencecn.mops
referencecn.mops
cn.mops
5.8 years ago
eddie.kaho.ho
• 0
0
votes
18
replies
4.5k
views
cn.MOPs: Error in value[[3L]](cond) :
cn.mops
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
laurabuggiotti
• 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
Cased
• 0
0
votes
1
reply
874
views
cn.mops: interpreting output when returnPosterior=TRUE
cn.mops
updated 6.0 years ago by
Günter Klambauer
▴ 540 • written 6.0 years ago by
laurabuggiotti
• 0
0
votes
2
replies
1.0k
views
best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
cn.mops
normalization
updated 13 months ago by
yr542
• 0 • written 6.1 years ago by
znl207
• 0
1
vote
2
replies
1.8k
views
cn.MOPS error: Error in if (WL >= sl[i]) { : missing value where TRUE/FALSE needed
cn.mops
6.2 years ago
hugo.magalhaes
▴ 10
0
votes
1
reply
995
views
Inconsistent Warning: GRanges out of bounds
cn.mops
granges
trim
Genomicranges-method
6.2 years ago
znl207
• 0
0
votes
1
reply
956
views
Error with plotting with target sequencing data
cn.mops
updated 6.2 years ago by
Günter Klambauer
▴ 540 • written 6.2 years ago by
jinxinhao1988
• 0
2
votes
6
replies
2.5k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error
cn.mops
updated 7 weeks ago by
ama304374
• 0 • written 6.3 years ago by
daijieqiong
▴ 10
0
votes
5
replies
1.5k
views
Error when use getSegmentReadCountsFromBAM
targeted sequencing
cn.mops
6.3 years ago
jinxinhao1988
• 0
0
votes
2
replies
1.5k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops
cnv
updated 6.4 years ago by
Günter Klambauer
▴ 540 • written 6.4 years ago by
martyferr90
▴ 20
0
votes
4
replies
1.3k
views
Is cn.mops can be used for detecting CNV for targeted sequencing of 8M region
cn.mops
updated 6.4 years ago by
Günter Klambauer
▴ 540 • written 6.4 years ago by
iszhucy
• 0
5
votes
7
replies
1.5k
views
about the runs with cn.mops
cn.mops
referencecn.mops
6.7 years ago
Bogdan
▴ 670
1
vote
2
replies
1.6k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 6.8 years ago by
Günter Klambauer
▴ 540 • written 6.8 years ago by
falk.zakrzewski
• 0
0
votes
1
reply
1.0k
views
getReadCountsFromBAM including bed information
cn.mops
bed files
getReadCountsFromBAM
6.8 years ago
Pau Marc Muñoz Torres
▴ 20
5
votes
9
replies
1.8k
views
reduce function after combining 2 GRanges objects from cn.mops output
GRanges
cn.mops
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
Haiying.Kong
▴ 110
2
votes
1
reply
1.0k
views
How to combine CNVDetectionResult objects in cn.mops package
cn.mops
updated 6.8 years ago by
Günter Klambauer
▴ 540 • written 6.8 years ago by
Haiying.Kong
▴ 110
0
votes
2
replies
1.1k
views
getReadCountsFromBAM and paired-end reads
cn.mops
6.9 years ago
Alexandre Kuhn
▴ 20
4
votes
2
replies
1.4k
views
using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
6.9 years ago
Bogdan
▴ 670
0
votes
2
replies
1.3k
views
Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 6.9 years ago by
Günter Klambauer
▴ 540 • written 7.0 years ago by
thestaroceanster
• 0
0
votes
4
replies
1.3k
views
cn.mops encounter negative width problem
cn.mops
referencecn.mops
updated 7.0 years ago by
Günter Klambauer
▴ 540 • written 7.0 years ago by
thestaroceanster
• 0
3
votes
1
reply
1.2k
views
R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops
referencecn.mops
updated 7.0 years ago by
Günter Klambauer
▴ 540 • written 7.2 years ago by
Bogdan
▴ 670
3
votes
5
replies
1.5k
views
R code for cn.mops
cn.mops
updated 13 months ago by
yr542
• 0 • written 7.2 years ago by
Bogdan
▴ 670
1
vote
1
reply
969
views
which cn.mops function should I use
cn.mops
updated 7.0 years ago by
Günter Klambauer
▴ 540 • written 7.0 years ago by
thestaroceanster
• 0
0
votes
1
reply
1.1k
views
cn.mops returning only "NA" as copy number
cn.mops
updated 7.1 years ago by
Günter Klambauer
▴ 540 • written 7.1 years ago by
rc16955
• 0
0
votes
2
replies
1.4k
views
about an error in cn.MOPS : could not find symbol "recursive" in environment of the generic function
cn.MOPS
7.2 years ago
Bogdan
▴ 670
4
votes
3
replies
1.3k
views
parameter "refSeqName" in function "getReadCountsFromBAM"
cn.mops
updated 7.2 years ago by
Günter Klambauer
▴ 540 • written 7.7 years ago by
Mohammad Alkhamis
• 0
0
votes
4
replies
1.4k
views
Call CNV in population with large depth variance
cn.mops
updated 7.3 years ago by
Günter Klambauer
▴ 540 • written 7.3 years ago by
Xiao Zhang
• 0
4
votes
9
replies
2.3k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops
cnv
targeted sequencing
updated 7.3 years ago by
Günter Klambauer
▴ 540 • written 7.3 years ago by
Bouzid.a
▴ 20
0
votes
1
reply
846
views
Input (X) data type is not numeric if read from GRanges obj
cn.mops
updated 7.3 years ago by
Günter Klambauer
▴ 540 • written 7.3 years ago by
Mohammad Alkhamis
• 0
1
vote
2
replies
1.2k
views
cn.mops: NA in the output of referencecn.mops
cn.mops
referencecn.mops
updated 7.4 years ago by
Günter Klambauer
▴ 540 • written 7.4 years ago by
Radek
▴ 90
0
votes
2
replies
1.1k
views
about cn.MOPS: paired vs unpaired
cn.mops
updated 7.5 years ago by
Günter Klambauer
▴ 540 • written 7.5 years ago by
Bogdan
▴ 670
50 results • Page
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
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JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
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SPIA plotP giving error
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