Biostar Contrasts

Showing : Contrasts • reset

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531

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DifferentialExpression contrasts interaction DESeq2

3 months ago • updated 7 weeks ago Nicole • 0

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327

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contrasts limma voom

updated 5 months ago by Gordon Smyth 46k • written 5 months ago by S T ▴ 80

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226

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DESeq2 contrasts

updated 6 months ago by Michael Love 37k • written 6 months ago by Mir • 0

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395

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topTable voom contrasts

11 months ago James • 0

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323

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DESeq2 phyloseq contrasts

updated 12 months ago by Kevin Blighe 3.6k • written 12 months ago by Mir • 0

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714

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DifferentialExpression DESeq2 contrasts

14 months ago Jane • 0

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567

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edger limma contrasts DGE

updated 2.6 years ago by James W. MacDonald 60k • written 2.6 years ago by s.connell • 0

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495

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deseq2 contrasts reference level

updated 2.7 years ago by Michael Love 37k • written 2.7 years ago by ananda2 • 0

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287

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edger contrasts model.matrix circadian

2.7 years ago ingerslev • 0

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632

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DESeq2 RNA-Seq Multifactorial Design GLM Contrasts

updated 2.7 years ago by Michael Love 37k • written 2.7 years ago by ananda2 • 0

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664

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deseq2 deseq differential expression contrasts

updated 2.7 years ago by Michael Love 37k • written 2.7 years ago by Keith Hughitt ▴ 170

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470

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limma nanostring contrasts

updated 2.9 years ago by Gordon Smyth 46k • written 2.9 years ago by uridavid.akavia • 0

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361

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deseq2 multiple factor design contrasts experimental design

updated 3.2 years ago by Michael Love 37k • written 3.2 years ago by kehoe • 0

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741

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edger limma design contrasts batch

updated 3.4 years ago by Aaron Lun ★ 27k • written 3.4 years ago by Pietro ▴ 30

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557

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edger contrasts

updated 3.5 years ago by Gordon Smyth 46k • written 3.5 years ago by Maiv • 0

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Comment: DESeq2 LFC changes sign after adjusting for surrogates by Marie • 0

Thanks a lot!

Comment: how to use Rsamtools to parse extra fields from STAR alignment by Jiping Wang ▴ 90

Thanks so much! That's exactly the solution I am looking for.

Comment: Mapping genome regions to gene symbols by michaelwegert • 0

function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…

Comment: OPLS-DA: confidence interval for accuracy metric by etienne.thevenot ▴ 20

- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …

Comment: Data input for aracne2regulon function in viper package by xlal • 0

You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…

Votes

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip

how to use Rsamtools to parse extra fields from STAR alignment

Comment: how to use Rsamtools to parse extra fields from STAR alignment

Answer: how to use Rsamtools to parse extra fields from STAR alignment

Single Sample GSEA (ssGSEA) and dynamic range of expression

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