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Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 13 months ago by
alex.pico
▴ 30 • written 14 months ago by
David R
▴ 90
3
votes
7
replies
1.9k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
21 months ago
Ortega-C
▴ 10
0
votes
0
replies
1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
2.0 years ago
gianni.drm
• 0
0
votes
1
reply
942
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 4.2 years ago by
alex.pico
▴ 30 • written 4.6 years ago by
ellisjc
• 0
3
votes
4
replies
1.7k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
5.8 years ago
Matthew Thornton
▴ 380
1
vote
0
replies
2.1k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray
bioconductor
cytoscape
mapfromtranscripts
6.3 years ago
lm795
▴ 10
0
votes
0
replies
1.3k
views
Help with generating network from gene expression data
gene expression
network
cytoscape
7.1 years ago
torgeirous
• 0
6
votes
8
replies
9.7k
views
WGCNA export to cytoscape
wgcna
cytoscape
updated 7.1 years ago by
harelarik
▴ 60 • written 7.8 years ago by
2323982403
▴ 60
0
votes
1
reply
1.5k
views
WGNA export to external software
WGCNA
network visualization
external software
cytoscape
updated 7.4 years ago by
Peter Langfelder
★ 3.0k • written 7.4 years ago by
je.maxfield
• 0
9 results • Page
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Answer: EuroBioC2023 abstract submission is open!
by
cirwin009
• 0
Submit here https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/ [Block Blast][1] This article offers a thorough and in-depth…
Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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