Showing : cytoscape • reset
1
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428
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 10 months ago by ▴ 30 • written 10 months ago by ▴ 90
3
votes
7
replies
1.7k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
18 months ago Ortega-C ▴ 10
0
votes
0
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1.1k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
21 months ago gianni.drm • 0
0
votes
1
reply
882
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.9 years ago by ▴ 30 • written 4.3 years ago by • 0
3
votes
4
replies
1.6k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.5 years ago Matthew Thornton ▴ 380
1
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0
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2.0k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.1 years ago lm795 ▴ 10
0
votes
0
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1.2k
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Help with generating network from gene expression data
gene expression network cytoscape
6.8 years ago torgeirous • 0
6
votes
8
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9.2k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 6.8 years ago by ▴ 60 • written 7.5 years ago by ▴ 60
0
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1
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1.4k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by • 0
9 results • Page 1 of 1
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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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