Showing : cytoscape • reset
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 2.0 years ago by ▴ 30 • written 2.1 years ago by ▴ 90
3
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7
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2.6k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.7 years ago Ortega-C ▴ 10
0
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0
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1.6k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.9 years ago gianni.drm • 0
0
votes
1
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1.2k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.1 years ago by ▴ 30 • written 5.5 years ago by • 0
3
votes
4
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2.1k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.7 years ago Matthew Thornton ▴ 390
1
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0
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2.5k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
7.2 years ago lm795 ▴ 10
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0
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1.6k
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Help with generating network from gene expression data
gene expression network cytoscape
8.0 years ago torgeirous • 0
6
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8
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11k
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WGCNA export to cytoscape
wgcna cytoscape
updated 8.0 years ago by ▴ 60 • written 8.7 years ago by ▴ 60
0
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1
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1.8k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 8.3 years ago by ★ 3.0k • written 8.3 years ago by • 0
9 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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