Showing : cytoscape • reset
1
vote
1
reply
662
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 90
3
votes
7
replies
2.4k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.5 years ago Ortega-C ▴ 10
0
votes
0
replies
1.5k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.7 years ago gianni.drm • 0
0
votes
1
reply
1.1k
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.9 years ago by ▴ 30 • written 5.3 years ago by • 0
3
votes
4
replies
2.0k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.5 years ago Matthew Thornton ▴ 380
1
vote
0
replies
2.4k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
7.0 years ago lm795 ▴ 10
0
votes
0
replies
1.5k
views
Help with generating network from gene expression data
gene expression network cytoscape
7.8 years ago torgeirous • 0
6
votes
8
replies
11k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 7.8 years ago by ▴ 60 • written 8.5 years ago by ▴ 60
0
votes
1
reply
1.7k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Popular Question to Maria Doyle ▴ 100
Locations • All
Pittsburgh, United States, just now
New Zealand, 15 minutes ago
San Diego, 42 minutes ago
WEHI, Melbourne, Australia, 42 minutes ago
United States, 43 minutes ago
Traffic: 1231 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6