Showing : cytoscape • reset
1
vote
1
reply
481
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 13 months ago by ▴ 30 • written 13 months ago by ▴ 90
3
votes
7
replies
1.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
20 months ago Ortega-C ▴ 10
0
votes
0
replies
1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
24 months ago gianni.drm • 0
0
votes
1
reply
931
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.1 years ago by ▴ 30 • written 4.5 years ago by • 0
3
votes
4
replies
1.7k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.7 years ago Matthew Thornton ▴ 380
1
vote
0
replies
2.1k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.3 years ago lm795 ▴ 10
0
votes
0
replies
1.3k
views
Help with generating network from gene expression data
gene expression network cytoscape
7.0 years ago torgeirous • 0
6
votes
8
replies
9.6k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 7.1 years ago by ▴ 60 • written 7.7 years ago by ▴ 60
0
votes
1
reply
1.5k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Awards • All
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to bastien_chassagnol • 0
Popular Question to Maria Doyle ▴ 100
Popular Question to Robert Ivanek ▴ 750
Locations • All
United States, 2 minutes ago
United States, 37 minutes ago
United States, 47 minutes ago
Canada, 52 minutes ago
WEHI, Melbourne, Australia, 58 minutes ago
Traffic: 780 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6