Showing : cytoscape • reset
1
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459
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 12 months ago by ▴ 30 • written 12 months ago by ▴ 90
3
votes
7
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1.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
19 months ago Ortega-C ▴ 10
0
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0
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1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
23 months ago gianni.drm • 0
0
votes
1
reply
912
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.0 years ago by ▴ 30 • written 4.5 years ago by • 0
3
votes
4
replies
1.6k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.6 years ago Matthew Thornton ▴ 380
1
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0
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2.0k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.2 years ago lm795 ▴ 10
0
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0
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1.2k
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Help with generating network from gene expression data
gene expression network cytoscape
7.0 years ago torgeirous • 0
6
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8
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9.5k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 7.0 years ago by ▴ 60 • written 7.6 years ago by ▴ 60
0
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1
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1.5k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by • 0
9 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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