Showing : cytoscape • reset
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 15 months ago by ▴ 30 • written 15 months ago by ▴ 90
3
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7
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2.0k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
22 months ago Ortega-C ▴ 10
0
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0
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1.3k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.1 years ago gianni.drm • 0
0
votes
1
reply
967
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.3 years ago by ▴ 30 • written 4.7 years ago by • 0
3
votes
4
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1.7k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.9 years ago Matthew Thornton ▴ 380
1
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0
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2.2k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.4 years ago lm795 ▴ 10
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0
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1.3k
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Help with generating network from gene expression data
gene expression network cytoscape
7.2 years ago torgeirous • 0
6
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8
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9.9k
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WGCNA export to cytoscape
wgcna cytoscape
updated 7.2 years ago by ▴ 60 • written 7.9 years ago by ▴ 60
0
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1
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1.5k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.5 years ago by ★ 3.0k • written 7.5 years ago by • 0
9 results • Page 1 of 1
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Answer: DESeq2 by ATpoint ★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
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