Biostar Cytoscape

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859

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RCy3 Cytoscape Rgraphviz GOstats

3.7 years ago Matthew Thornton ▴ 350

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821

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WGCNA network visualization external software cytoscape

updated 5.4 years ago by Peter Langfelder ★ 2.7k • written 5.4 years ago by je.maxfield • 0

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wgcna cytoscape

updated 5.1 years ago by harelarik ▴ 60 • written 5.7 years ago by 2323982403 ▴ 50

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Cytoscape Heatmap heatmaps WGCNA

1 day ago gianni.drm • 0

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1.1k

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microarray bioconductor cytoscape mapfromtranscripts

4.3 years ago lm795 ▴ 10

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650

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gene expression network cytoscape

5.1 years ago torgeirous • 0

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451

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RCy3 Cytoscape R Newick Bioconductor

updated 2.1 years ago by alex.pico • 0 • written 2.6 years ago by ellisjc • 0

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Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k

BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …

Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k

If you want to know what genes are different between lesion and treated, compare them to each other.

Comment: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I looked at the responses to your posts because you said that you felt discouraged.

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Answer: Doubts about manipulation and annotation of microarray files deposited at GEO

C: Batch correction in DESeq2

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair

A: Calculate S/N ratios from apeglm for GSEA

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