Bioconductor Cytoscape

Showing : cytoscape • reset

votes

replies

8.3k

views

wgcna cytoscape

updated 6.3 years ago by harelarik ▴ 60 • written 7.0 years ago by 2323982403 ▴ 60

votes

replies

1.4k

views

RCy3 Cytoscape Rgraphviz GOstats

5.0 years ago Matthew Thornton ▴ 350

votes

replies

1.2k

views

Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

vote

replies

1.7k

views

microarray bioconductor cytoscape mapfromtranscripts

5.5 years ago lm795 ▴ 10

vote

273

views

Cytoscape RCy3 RCy

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

votes

1.2k

views

WGCNA network visualization external software cytoscape

updated 6.6 years ago by Peter Langfelder ★ 3.0k • written 6.6 years ago by je.maxfield • 0

votes

736

views

RCy3 Cytoscape R Newick Bioconductor

updated 3.4 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

votes

replies

814

views

Cytoscape Heatmap heatmaps WGCNA

14 months ago gianni.drm • 0

votes

replies

1.0k

views

gene expression network cytoscape

6.3 years ago torgeirous • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Comment: DEseq2 coefficient by JKim • 0

Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Awards • All

Popular Question to tangming2005 ▴ 190