Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
dgelist
•
reset
0
votes
2
replies
468
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
11 months ago
prity6459
• 0
2
votes
2
replies
846
views
Inccorect group number in DGEList
edgeR
Bioconductor
Dseq2
dgelist
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Fiona
• 0
1
vote
1
reply
1.2k
views
Optimal edgeR design for a single-factor experiment
factors
edgeR
setup
DGELIst
updated 3.8 years ago by
Gordon Smyth
52k • written 3.8 years ago by
Alex
• 0
0
votes
2
replies
2.2k
views
create DGElist Object
edger
DGElist
updated 6.0 years ago by
Gordon Smyth
52k • written 6.0 years ago by
naser.sadri
• 0
0
votes
4
replies
2.0k
views
Error in RnaSeqGeneEdgeRQL
dgelist
edger
RnaSeqGeneEdgeRQL
updated 6.6 years ago by
Gordon Smyth
52k • written 6.6 years ago by
Kevin
• 0
1
vote
4
replies
2.6k
views
edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
edgeR
summarizedexperiment
dgelist
6.9 years ago
aljoscha.leusmann
• 0
0
votes
0
replies
1.1k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
7.0 years ago
Larry K.
• 0
0
votes
1
reply
2.6k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
belmore
• 0
3
votes
3
replies
4.2k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger
DGEList
org.hs.eg.db
gene annotation
updated 3.5 years ago by
IIart.hubII
• 0 • written 7.3 years ago by
svlachavas
▴ 840
0
votes
2
replies
3.6k
views
Design of 'group' object in DGElist function
egder
dgelist
group
rnaseq
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
fawazfebin
▴ 60
2
votes
4
replies
3.8k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 7.7 years ago by
Gordon Smyth
52k • written 7.7 years ago by
alakatos
▴ 130
4
votes
6
replies
3.0k
views
How to carry out differential gene expression starting with a table of TMM normalised values without access to the raw reads?
edger
raw reads
TMM normalised values
DGEList
differential gene expression
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
benedict.ng
▴ 30
3
votes
7
replies
7.3k
views
edgeR subsetting DGEList by column/sample
edger
subsetting
dgelist
updated 8.7 years ago by
Gordon Smyth
52k • written 8.7 years ago by
mnaymik
▴ 10
1
vote
4
replies
21k
views
edgeR: non-unique values when setting 'row.names' - but the row names are unique!!!
edgeR
row.names
DGEList
10.1 years ago
ccheung
• 0
14 results • Page
1 of 1
Recent ...
Replies
Answer: affy::rma results doesn't match with ncbi website
by
James W. MacDonald
68k
Please note that RMA is a method intended to normalize and summarize a set of samples rather than a single sample (it doesn't make much sen…
Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
by
shepherl
4.1k
Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`
Comment: Limma - Complex 2-way multi-level contrast with paired samples
by
Elizabeth
• 0
Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!
Answer: affy::rma results doesn't match with ncbi website
by
ATpoint
★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Votes
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Awards
• All
Scholar
to
Michael Love
43k
Scholar
to
James W. MacDonald
68k
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Popular Question
to
igor
▴ 50
Popular Question
to
xiaofeiwang198266
• 0
Locations
• All
United States,
1 minute ago
united states,
9 minutes ago
United States,
17 minutes ago
Germany,
21 minutes ago
United States,
21 minutes ago
Traffic: 1249 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6