Bioconductor Dgelist

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754

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DGEList edgeR

21 months ago prity6459 • 0

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1.1k

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edgeR Bioconductor Dseq2 dgelist

updated 3.1 years ago by Gordon Smyth 53k • written 3.1 years ago by Fiona • 0

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1.4k

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factors edgeR setup DGELIst

updated 4.7 years ago by Gordon Smyth 53k • written 4.7 years ago by Alex • 0

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2.5k

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edger DGElist

updated 6.8 years ago by Gordon Smyth 53k • written 6.8 years ago by naser.sadri • 0

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2.3k

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dgelist edger RnaSeqGeneEdgeRQL

updated 7.5 years ago by Gordon Smyth 53k • written 7.5 years ago by Kevin • 0

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3.0k

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edgeR summarizedexperiment dgelist

7.8 years ago aljoscha.leusmann • 0

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1.4k

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tree bootstrap dgelist plotmds

7.9 years ago Larry K. • 0

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2.8k

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edger dgelist NA egsea

updated 7.9 years ago by Gordon Smyth 53k • written 7.9 years ago by belmore • 0

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4.5k

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edger DGEList org.hs.eg.db gene annotation

updated 4.3 years ago by IIart.hubII • 0 • written 8.1 years ago by svlachavas ▴ 840

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3.9k

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egder dgelist group rnaseq

updated 8.2 years ago by Aaron Lun ★ 29k • written 8.2 years ago by fawazfebin ▴ 60

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4.3k

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DGElist filter edgeR

updated 8.5 years ago by Gordon Smyth 53k • written 8.6 years ago by alakatos ▴ 130

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3.4k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by benedict.ng ▴ 20

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7.8k

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edger subsetting dgelist

updated 9.5 years ago by Gordon Smyth 53k • written 9.5 years ago by mnaymik ▴ 10

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22k

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edgeR row.names DGEList

11.0 years ago ccheung • 0

14 results • Page 1 of 1

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Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by emily.wolfrum • 0

Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…

Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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