Bioconductor Dgelist

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753

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DGEList edgeR

21 months ago prity6459 • 0

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1.1k

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edgeR Bioconductor Dseq2 dgelist

updated 3.1 years ago by Gordon Smyth 53k • written 3.1 years ago by Fiona • 0

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1.4k

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factors edgeR setup DGELIst

updated 4.7 years ago by Gordon Smyth 53k • written 4.7 years ago by Alex • 0

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2.5k

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edger DGElist

updated 6.8 years ago by Gordon Smyth 53k • written 6.8 years ago by naser.sadri • 0

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2.3k

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dgelist edger RnaSeqGeneEdgeRQL

updated 7.5 years ago by Gordon Smyth 53k • written 7.5 years ago by Kevin • 0

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3.0k

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edgeR summarizedexperiment dgelist

7.8 years ago aljoscha.leusmann • 0

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1.4k

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tree bootstrap dgelist plotmds

7.9 years ago Larry K. • 0

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2.8k

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edger dgelist NA egsea

updated 7.9 years ago by Gordon Smyth 53k • written 7.9 years ago by belmore • 0

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4.5k

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edger DGEList org.hs.eg.db gene annotation

updated 4.3 years ago by IIart.hubII • 0 • written 8.1 years ago by svlachavas ▴ 840

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3.9k

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egder dgelist group rnaseq

updated 8.2 years ago by Aaron Lun ★ 29k • written 8.2 years ago by fawazfebin ▴ 60

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4.2k

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DGElist filter edgeR

updated 8.5 years ago by Gordon Smyth 53k • written 8.5 years ago by alakatos ▴ 130

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3.4k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by benedict.ng ▴ 20

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7.8k

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edger subsetting dgelist

updated 9.5 years ago by Gordon Smyth 53k • written 9.5 years ago by mnaymik ▴ 10

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22k

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edgeR row.names DGEList

11.0 years ago • updated 10.9 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

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Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760