Bioconductor Dgelist

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627

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DGEList edgeR

17 months ago prity6459 • 0

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965

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edgeR Bioconductor Dseq2 dgelist

updated 2.7 years ago by Gordon Smyth 53k • written 2.7 years ago by Fiona • 0

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1.3k

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factors edgeR setup DGELIst

updated 4.3 years ago by Gordon Smyth 53k • written 4.3 years ago by Alex • 0

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2.4k

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edger DGElist

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by naser.sadri • 0

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2.2k

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dgelist edger RnaSeqGeneEdgeRQL

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by Kevin • 0

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2.8k

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edgeR summarizedexperiment dgelist

7.4 years ago aljoscha.leusmann • 0

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1.3k

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tree bootstrap dgelist plotmds

7.5 years ago Larry K. • 0

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2.7k

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edger dgelist NA egsea

updated 7.6 years ago by Gordon Smyth 53k • written 7.6 years ago by belmore • 0

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4.4k

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edger DGEList org.hs.eg.db gene annotation

updated 4.0 years ago by IIart.hubII • 0 • written 7.8 years ago by svlachavas ▴ 840

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3.8k

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egder dgelist group rnaseq

updated 7.9 years ago by Aaron Lun ★ 29k • written 7.9 years ago by fawazfebin ▴ 60

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4.1k

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DGElist filter edgeR

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by alakatos ▴ 130

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3.2k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 9.1 years ago by Steve Lianoglou ★ 13k • written 9.1 years ago by benedict.ng ▴ 30

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7.6k

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edger subsetting dgelist

updated 9.1 years ago by Gordon Smyth 53k • written 9.1 years ago by mnaymik ▴ 10

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22k

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edgeR row.names DGEList

10.6 years ago ccheung • 0

14 results • Page 1 of 1

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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k