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Showing :
dispersion
•
reset
2
votes
2
replies
3.7k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
23 months ago
Linton
• 0
0
votes
3
replies
1.4k
views
Dispersion outliers genes
Dispersion
DESeq2
2.6 years ago
raya.fai
▴ 60
1
vote
1
reply
1.4k
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
Julia
▴ 10
1
vote
2
replies
2.0k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
4.0 years ago
m.glymenaki
• 0
4
votes
5
replies
2.2k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
4.5 years ago
Manal
• 0
0
votes
0
replies
840
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
4.2k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 4.8 years ago by
Michael Love
43k • written 5.1 years ago by
Kelen
▴ 10
0
votes
2
replies
1.3k
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 5.8 years ago by
Gordon Smyth
53k • written 5.8 years ago by
Ruben.wauters
• 0
3
votes
3
replies
2.5k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 6.5 years ago by
onlychainsaw2019
• 0 • written 6.9 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
2.3k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
6.6 years ago
fiona.dick91
▴ 60
0
votes
5
replies
3.3k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
6.9 years ago
eva-m.petit
• 0
0
votes
4
replies
2.0k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.9k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 7.5 years ago by
Ryan C. Thompson
★ 7.9k • written 7.5 years ago by
Mr.RB
▴ 20
8
votes
12
replies
13k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
Mr.RB
▴ 20
0
votes
13
replies
8.0k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
7.7 years ago
Frederik Ziebell
▴ 30
0
votes
11
replies
2.8k
views
Strange dispersion plot
deseq2
dispersion
7.8 years ago
Moose123
• 0
5
votes
7
replies
8.6k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 8.1 years ago by
Bernd Klaus
▴ 610 • written 8.1 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.5k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 9.2 years ago by
Ryan C. Thompson
★ 7.9k • written 9.2 years ago by
nancyjwahl7
• 0
4
votes
3
replies
2.2k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 9.5 years ago by
Michael Love
43k • written 9.5 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.8k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 9.5 years ago by
Aaron Lun
★ 29k • written 9.5 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.5k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 9.5 years ago by
Gordon Smyth
53k • written 9.5 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.6k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 9.8 years ago by
Michael Love
43k • written 9.8 years ago by
hans
• 0
3
votes
2
replies
4.7k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
10.4 years ago
meeta.mistry
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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