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dss
•
reset
0
votes
2
replies
2.1k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
8.7 years ago
Tim Peters
▴ 180
2
votes
4
replies
2.1k
views
Error: could not find function "DMLtest"
dss
8.1 years ago
kafkaskid
▴ 20
0
votes
1
reply
1.4k
views
limma design matrix missing a Date column
limma
DSS
limma
DSS
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Sabet, Julia A
▴ 180
0
votes
6
replies
1.6k
views
limma complex contrast matrix
DSS
DSS
updated 13.2 years ago by
Ina Hoeschele
▴ 620 • written 13.2 years ago by
Prasad Siddavatam
▴ 150
0
votes
3
replies
1.7k
views
QuasiSeq vs DSS
RNASeq
Cancer
edgeR
DSS
RNASeq
Cancer
edgeR
DSS
updated 11.2 years ago by
Ryan C. Thompson
★ 7.9k • written 11.2 years ago by
Richard Friedman
★ 2.0k
1
vote
1
reply
1.3k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 4.9 years ago by
keegan
▴ 60 • written 4.9 years ago by
gjl
▴ 10
0
votes
1
reply
732
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
varunorama
• 0
1
vote
2
replies
1.1k
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
3.5 years ago
vi.hammer
• 0
0
votes
7
replies
2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
updated 18 months ago by
James W. MacDonald
65k • written 2.0 years ago by
16301050225
• 0
1
vote
1
reply
255
views
Question about correction of confounders for EWAS
dss
DSS
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
chuanjiao6
• 0
0
votes
0
replies
735
views
DSS for non-CpG site analysis
DSS
methylation
4.7 years ago
CalM
• 0
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.3 years ago
Jojo
• 0
0
votes
0
replies
892
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS
bug
troubleshooting
callDMR
4.4 years ago
matthew.kearney
• 0
0
votes
0
replies
746
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
4.1 years ago
stephanie.rialle
• 0
0
votes
1
reply
974
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS
DMRcaller
updated 12 months ago by
Noelia
• 0 • written 21 months ago by
Claire
• 0
3
votes
0
replies
713
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
2.7 years ago
cer.chloe
▴ 30
0
votes
1
reply
1.0k
views
DSS DMLtest with different group sizes
DSS
7.8 years ago
aerval
• 0
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 6 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
0
votes
0
replies
890
views
DSS DMLtest Object features
DSS
DMLtest
6.2 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.1 years ago
floriandeckert
▴ 30
0
votes
0
replies
512
views
Confusing DSS outputs with smoothing (DMLtest)
DSS
13 months ago
Weisheng
• 0
21 results • Page
1 of 1
Recent ...
Replies
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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