Bioconductor Epigenomics

Showing : epigenomics • reset

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380

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Epigenomics NGS Aging Biobase

updated 6 months ago by Michael Love 43k • written 6 months ago by arne.sahm • 0

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1.0k

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methylation epigenomics slurm mpi methylmix

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by parra.sev ▴ 20

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1.1k

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cancer networks genomics epigenomics Job

5.1 years ago • updated 5.0 years ago marschaefer • 0

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1.1k

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bioinformatician job epigenomics hts Job

6.1 years ago mattia pelizzola ▴ 200

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1.5k

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microbiome epigenomics bioinformatics analyst NGS Job

6.7 years ago Jenny Drnevich ★ 2.0k

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1.5k

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job bioinformatics microbiome metagenomics epigenomics Job

6.9 years ago Jenny Drnevich ★ 2.0k

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epigenomics RNA methylation RNA dynamics chromatin computational biology Job

7.0 years ago mattia pelizzola ▴ 200

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3.4k

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ChAMP methylationepic epicarray epigenomics

updated 7.2 years ago by rcavalca ▴ 140 • written 7.2 years ago by karthikrpad ▴ 10

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4.8k

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AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 7.6 years ago by vanesa_1230 • 0 • written 9.6 years ago by Sonali Arora ▴ 390

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1.7k

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conference transcription epigenomics visualization infrastructure News

8.5 years ago Matthew Ritchie ▴ 1000

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1.5k

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roadmap project annotationhub epigenomics big data

updated 8.6 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by kevin.rue ▴ 350

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1.9k

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rnaseq single cell bioinformatics R epigenomics Job

9.2 years ago Garry Myers • 0

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1.9k

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sequencing transcription epigenomics visualization infrastructure News

9.5 years ago • updated 9.4 years ago Matthew Ritchie ▴ 1000

13 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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