Showing : exonmap • reset
2
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Important r packages not available for R version 3.1.1
exonmap exon array analysis bioconductor
7.9 years ago svlachavas ▴ 800
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734
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Exonmap & xmapcore covdesc variable problem
affy exonmap xmapcore affy exonmap xmapcore
10.6 years ago Prime, John ▴ 10
0
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1
reply
727
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Easy way to map Exon array probes to coordinates?
Cancer exonmap xps Cancer exonmap xps
updated 11.3 years ago by ★ 3.9k • written 11.3 years ago by ▴ 260
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2
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780
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problems with Affymetrix probes id using exonmap and xmapcore
Annotation cdf exonmap xmapcore Annotation cdf exonmap xmapcore
11.8 years ago Tim Yates ▴ 250
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0
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614
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problems with Affymetrix probes id using exonmap and xmapcore
Annotation cdf exonmap xmapcore Annotation cdf exonmap xmapcore
11.8 years ago Gomez Moruno, Antonio ▴ 30
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0
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663
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exonmap problems with rma normalization
Normalization cdf exonmap Normalization cdf exonmap
11.8 years ago Gomez Moruno, Antonio ▴ 30
0
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1
reply
667
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ExonMap and xmap package question
probe limma convert exonmap probe limma convert exonmap
12.2 years ago Julie Zhu ★ 4.3k
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0
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622
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Human Affymetrix Exon microarrays
exonmap exonmap
12.3 years ago Ernest Turro ▴ 30
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0
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724
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R: Doubt about the use of xmapcore Vs exonmap
exonmap xmapcore exonmap xmapcore
12.3 years ago Manca Marco PATH ▴ 340
0
votes
1
reply
534
views
(no subject)
exonmap xmapcore exonmap xmapcore
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 10
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1
reply
828
views
exonmap/xmapcore and splicing.index
exonmap xmapcore exonmap xmapcore
updated 12.3 years ago by ▴ 190 • written 12.3 years ago by ▴ 70
0
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7
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1.3k
views
exonmap/xmapcore error
exonmap exonmap
updated 12.5 years ago by ★ 1.1k • written 12.5 years ago by ▴ 270
0
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0
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578
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Exonmap to xmapcore
exonmap xmapcore exonmap xmapcore
12.6 years ago Fong Chun Chan ▴ 130
0
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1
reply
726
views
exonMap problems
exonmap exonmap
updated 12.8 years ago by ▴ 250 • written 12.8 years ago by ▴ 40
0
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2
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876
views
exon array annotation files
Annotation Cancer cdf exonmap Annotation Cancer cdf exonmap
updated 13.4 years ago by ▴ 190 • written 13.4 years ago by ▴ 970
2
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1
reply
1.0k
views
Best way to do quality control and analysis on Exon arrays
Annotation Cancer affy exonmap Annotation Cancer affy exonmap
updated 7.5 years ago by ▴ 10 • written 13.6 years ago by ★ 1.9k
0
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2
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885
views
Affy Exon arrays
affy exonmap affy exonmap
updated 13.7 years ago by ★ 3.9k • written 13.7 years ago by ▴ 570
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0
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602
views
exonmap and splicing index
limma exonmap limma exonmap
13.9 years ago Mathieu Parent ▴ 30
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0
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565
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Exonmap and Limma
limma exonmap limma exonmap
13.9 years ago Mathieu Parent ▴ 30
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0
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499
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Problem memory exonmap
exonmap exonmap
13.9 years ago Guido Leoni ▴ 200
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0
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736
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Bioconductor Digest, Vol 73, Issue 8
Microarray Annotation GO hgu133plus2 probe biomaRt flowViz exonmap Microarray Annotation
13.9 years ago ramesh aathe ▴ 10
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1
reply
649
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running exonmap package and chimp arrays
exonmap exonmap
updated 13.9 years ago by ▴ 50 • written 13.9 years ago by ▴ 240
0
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9
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1.1k
views
specifications for exonmap database config file?
GO exonmap GO exonmap
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 70
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0
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925
views
Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Annotation Normalization probe affy PROcess oligo exonmap Annotation Normalization probe
14.2 years ago Alexander C Cambon ▴ 30
0
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1
reply
704
views
exonmap question: rma (& plier) crashes
exonmap exonmap
updated 14.5 years ago by ★ 1.1k • written 14.5 years ago by ▴ 70
0
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6
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1.2k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf exonmap xps cdf exonmap xps
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ▴ 190
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0
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746
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exonmap error & questions (Affy mouse exon arrays)
exonmap exonmap
14.6 years ago Wolfgang Raffelsberger ▴ 160
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0
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542
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Affy EXON Array: iterPLIER or RMA
affy exonmap affy exonmap
14.7 years ago juancui ▴ 10
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0
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538
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bugs in exonmap?
exonmap exonmap
14.8 years ago Xin Zheng ▴ 30
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0
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493
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[Fwd: Re: exonmap, xmap and xmapbridge]
exonmap exonmap
15.0 years ago Paul Hammer ▴ 220
0
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10
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1.1k
views
exonmap RMA function
Microarray Cancer affyPLM exonmap Microarray Cancer affyPLM exonmap
updated 15.0 years ago by ▴ 250 • written 15.0 years ago by 25k
0
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2
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787
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exonmap questions
affy PROcess exonmap affy PROcess exonmap
updated 15.2 years ago by 62k • written 15.2 years ago by ▴ 890
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0
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649
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exonmap package - MySQL error
exonmap exonmap
15.3 years ago Dykema, Karl ▴ 90
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0
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742
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
15.4 years ago Wolfgang Raffelsberger ▴ 160
0
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4
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995
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 15.4 years ago by 62k • written 15.4 years ago by ▴ 20
0
votes
1
reply
855
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 15.4 years ago by ▴ 120 • written 15.4 years ago by ▴ 10
0
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4
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1.1k
views
Problem with some exonmap X.to.Y functions
exonmap exonmap
updated 15.5 years ago by ★ 1.1k • written 15.5 years ago by ▴ 40
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0
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464
views
[Fwd: exonmap install problem] Resolution note
exonmap exonmap
15.5 years ago Sophie Gallina ▴ 40
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0
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457
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exonmap install problem
Cancer exonmap Cancer exonmap
15.5 years ago Seth Falcon ★ 7.4k
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0
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567
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exonmap install problem
Microarray exonmap Microarray exonmap
15.5 years ago Sophie Gallina ▴ 40
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6
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923
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exonmap install
affy exonmap affy exonmap
updated 15.9 years ago by 62k • written 15.9 years ago by ★ 1.4k
41 results • Page 1 of 1
Recent ...
Replies
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Sva and batch effect by Gordon Smyth 47k
(+1). I find that ComBat tends to introduce spurious differential expression so, you think there's a batch effect affecting the variances a…
Comment: Advice for the analysis of microarray data with limma by Gordon Smyth 47k
You mean references on orthogonal polynomials? Polynomial approximation is a classic topic in mathematics and statistics and there are many…
Comment: Limma-voom with inverse probability weights (similar to sample weights) by Gordon Smyth 47k
The potential problem isn't with empirical Bayes with the fact that the variance estimate from your method A linear model might not be mean…
Votes
Answer: Sva and batch effect
Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: Limma-voom with inverse probability weights
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