Showing : exons • reset
6
votes
4
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2.6k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 670
2
votes
6
replies
2.0k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga tcgabiolinks microarray exons oligonucleotide
updated 7.9 years ago by ▴ 270 • written 8.0 years ago by • 0
0
votes
1
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2.0k
views
Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate exons txdb.hsapiens.ucsc.hg19.knowngene
8.8 years ago adnan.niazi • 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 6.7 years ago by ★ 11k • written 6.7 years ago by ▴ 110
3
votes
7
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1.5k
views
To find Differential expressed exons using xps package
xps exons
updated 8.1 years ago by ★ 3.9k • written 8.1 years ago by ▴ 110
2
votes
4
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1.4k
views
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb txdb.hsapiens.ucsc.hg19.knowngene granges exons ucsc
updated 5.4 years ago by 65k • written 5.4 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Extract exon features from overlapping genes
GenomicFeatures exons
updated 8.9 years ago by 16k • written 8.9 years ago by • 0
0
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3
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1.2k
views
Increased number of total exons in DEXSeq
dexseq exons grch37
7.2 years ago • updated 7.1 years ago aditi ▴ 20
0
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0
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1.1k
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plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
8.7 years ago Jose M Garcia Manteiga ▴ 310
2
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3
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904
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Human Exon: arome.affymetrix residuals Inf value
exons exon array analysis
updated 5.5 years ago by 65k • written 5.5 years ago by • 0
0
votes
0
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661
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Filtering probesets for HuEx ST1.0 after probeset normalization
microarray exons probefiltering
5.5 years ago GENOMIC_region • 0
11 results • Page 1 of 1
Recent ...
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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