Showing : experimental design • reset
6
votes
6
replies
5.9k
views
Limma multi-group analysis - General F-test
limma experimental design
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 10
0
votes
1
reply
1.0k
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
vote
2
replies
1.3k
views
Call DE genes on Unbalanced design with controls
edger experimental design
6.6 years ago timedreamer ▴ 10
0
votes
4
replies
1.5k
views
DESeq2 analysis design - different individuals for all samples
deseq2 rnaseq model.matrix experimental design
7.1 years ago Maithê Barros ▴ 10
1
vote
9
replies
2.4k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 7.1 years ago by ★ 29k • written 7.1 years ago by ★ 1.5k
0
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0
replies
1.2k
views
Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
7.2 years ago dezer ▴ 10
2
votes
6
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1.6k
views
DESeq2 Gene Expression Set up: Behavior vs Age
deseq2 experimental design
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
4
votes
2
replies
1.6k
views
How does the function model.matrix (to define experimental design) really works ?
experimental design model.matrix edger
updated 7.8 years ago by ★ 7.9k • written 7.8 years ago by ▴ 20
1
vote
2
replies
2.0k
views
DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.9 years ago by 43k • written 7.9 years ago by • 0
0
votes
1
reply
3.7k
views
DESeq2 design model/contrasts question 3 level condition
deseq2 model design differential gene expression experimental design
updated 7.9 years ago by 43k • written 7.9 years ago by • 0
6
votes
1
reply
11k
views
DESeq2 interaction term in two-factor design, which contrasts?
deseq2 experimental design interaction model
updated 8.4 years ago by 43k • written 8.4 years ago by ▴ 30
1
vote
2
replies
5.1k
views
Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 8.6 years ago by ▴ 690 • written 8.6 years ago by ▴ 10
1
vote
2
replies
2.0k
views
Trying to design a model(s) for a two factor RNA-seq experimental analysis in EdgeR with interaction
EdgeR RNAseq experimental design glm
updated 8.8 years ago by ★ 29k • written 8.8 years ago by • 0
0
votes
1
reply
1.2k
views
Genotypic difference design using deseq2
Deseq2 genotype experimental design
updated 8.9 years ago by 43k • written 8.9 years ago by ▴ 90
5
votes
2
replies
2.4k
views
DESeq2 design matrix for timecourse
deseq2 experimental design timecourse rnaseq model
updated 9.2 years ago by 43k • written 9.2 years ago by ▴ 20
2
votes
2
replies
1.7k
views
EdgeR experimental design matrix
edger differential gene expression experimental design
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
6
votes
1
reply
2.9k
views
DESeq2, difficulties with multi-factor design
DESeq2 multiple factor design experimental design contrast
updated 10.1 years ago by 43k • written 10.1 years ago by ▴ 60
5
votes
7
replies
2.7k
views
what conditions affect my gene (with limma?)
limma geo experimental design
updated 10.4 years ago by 53k • written 10.4 years ago by • 0
4
votes
3
replies
3.4k
views
DESeq2 - design for TCGA level 3 data
deseq2 tcga experimental design multiple factor design
updated 10.6 years ago by 43k • written 10.6 years ago by ▴ 40
1
vote
2
replies
2.1k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 10.7 years ago by 53k • written 10.7 years ago by ▴ 450
0
votes
4
replies
2.4k
views
Question: DESeq2 nested design, multifactor test
deseq2 experimental design
10.7 years ago Shucong Li ▴ 60
21 results • Page 1 of 1
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Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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