Showing : experimental design • reset
6
votes
6
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4.9k
views
Limma multi-group analysis - General F-test
limma experimental design
updated 4.5 years ago by 51k • written 4.5 years ago by ▴ 10
0
votes
1
reply
822
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 5.5 years ago by 42k • written 5.5 years ago by • 0
1
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2
replies
939
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Call DE genes on Unbalanced design with controls
edger experimental design
5.5 years ago timedreamer ▴ 10
0
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4
replies
1.1k
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DESeq2 analysis design - different individuals for all samples
deseq2 rnaseq model.matrix experimental design
6.0 years ago Maithê Barros ▴ 10
1
vote
9
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1.8k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ★ 1.5k
0
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0
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1.0k
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Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
6.1 years ago dezer ▴ 10
2
votes
6
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1.3k
views
DESeq2 Gene Expression Set up: Behavior vs Age
deseq2 experimental design
updated 6.2 years ago by 42k • written 6.2 years ago by • 0
4
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2
replies
1.3k
views
How does the function model.matrix (to define experimental design) really works ?
experimental design model.matrix edger
updated 6.7 years ago by ★ 7.9k • written 6.7 years ago by ▴ 20
1
vote
2
replies
1.6k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 6.8 years ago by 42k • written 6.8 years ago by • 0
0
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1
reply
3.3k
views
DESeq2 design model/contrasts question 3 level condition
deseq2 model design differential gene expression experimental design
updated 6.8 years ago by 42k • written 6.8 years ago by • 0
6
votes
1
reply
11k
views
DESeq2 interaction term in two-factor design, which contrasts?
deseq2 experimental design interaction model
updated 7.3 years ago by 42k • written 7.3 years ago by ▴ 30
1
vote
2
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4.7k
views
Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 7.5 years ago by ▴ 690 • written 7.5 years ago by ▴ 10
1
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2
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1.7k
views
Trying to design a model(s) for a two factor RNA-seq experimental analysis in EdgeR with interaction
EdgeR RNAseq experimental design glm
updated 7.7 years ago by ★ 28k • written 7.7 years ago by • 0
0
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1
reply
1.0k
views
Genotypic difference design using deseq2
Deseq2 genotype experimental design
updated 7.8 years ago by 42k • written 7.8 years ago by ▴ 90
5
votes
2
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2.0k
views
DESeq2 design matrix for timecourse
deseq2 experimental design timecourse rnaseq model
updated 8.1 years ago by 42k • written 8.1 years ago by ▴ 20
2
votes
2
replies
1.4k
views
EdgeR experimental design matrix
edger differential gene expression experimental design
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
6
votes
1
reply
2.6k
views
DESeq2, difficulties with multi-factor design
DESeq2 multiple factor design experimental design contrast
updated 9.0 years ago by 42k • written 9.0 years ago by ▴ 60
5
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7
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2.3k
views
what conditions affect my gene (with limma?)
limma geo experimental design
updated 9.2 years ago by 51k • written 9.3 years ago by • 0
4
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3
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3.1k
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DESeq2 - design for TCGA level 3 data
deseq2 tcga experimental design multiple factor design
updated 9.5 years ago by 42k • written 9.5 years ago by ▴ 40
1
vote
2
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1.8k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.6 years ago by 51k • written 9.6 years ago by ▴ 450
0
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4
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2.1k
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Question: DESeq2 nested design, multifactor test
deseq2 experimental design
9.6 years ago Shucong Li ▴ 60
21 results • Page 1 of 1
Recent ...
Replies
Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Votes
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
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