Showing : geneplotter • reset
0
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10
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1.9k
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Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
5
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1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
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3
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1.2k
views
contributing to Bioconductor
GO Clustering geneplotter GO Clustering geneplotter
21.1 years ago Wilkinson, Mark ▴ 60
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.2 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.5k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 270
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4
replies
1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 6.5k
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2
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1.1k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 70
0
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2
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1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
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votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
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2
replies
1.2k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 16.5 years ago by ▴ 540 • written 16.5 years ago by ★ 1.6k
0
votes
2
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1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
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votes
2
replies
1.7k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.4 years ago by ▴ 680 • written 19.4 years ago by ▴ 10
0
votes
2
replies
870
views
greenred.colors() in geneplotter
geneplotter geneplotter
19.2 years ago michael watson IAH-C ★ 3.4k
0
votes
12
replies
1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
0
votes
2
replies
1.6k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
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votes
4
replies
2.2k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 16.9 years ago by ★ 1.9k • written 16.9 years ago by ▴ 250
0
votes
3
replies
1.1k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 160
0
votes
6
replies
3.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
0
votes
4
replies
2.3k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 270
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votes
5
replies
3.2k
views
From eSet to AffyBatch Object
geneplotter affy geneplotter affy
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 120
0
votes
5
replies
1.7k
views
annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 160
0
votes
1
reply
768
views
Help using annotation data without explicitly building data package
Annotation geneplotter Annotation geneplotter
updated 20.5 years ago by 6.7k • written 20.5 years ago by 21k
0
votes
1
reply
813
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
votes
1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
votes
3
replies
1.9k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP geneplotter SNPchip SNP geneplotter SNPchip
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 40
0
votes
1
reply
1.3k
views
Error installing geneplotter
geneplotter geneplotter
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ★ 13k
0
votes
13
replies
2.3k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 30
0
votes
1
reply
1.2k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 16.8 years ago by ▴ 460 • written 16.8 years ago by ▴ 10
0
votes
1
reply
1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.8 years ago Steven McKinney ▴ 310
0
votes
1
reply
1.4k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 410
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votes
1
reply
1.2k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 270
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1
reply
1.1k
views
geneplotter - buildChromLoc for arrays with no .db package
GO geneplotter GO geneplotter
updated 11.4 years ago by ★ 7.2k • written 11.4 years ago by ▴ 480
0
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1
reply
1.1k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 16.6 years ago by ▴ 460 • written 16.6 years ago by ▴ 70
0
votes
1
reply
1.0k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Matthew Hannah ▴ 940
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1
reply
1.3k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.5 years ago by ▴ 460 • written 16.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Rgraphviz edge attributes can't be changed on Mac
geneplotter Rgraphviz geneplotter Rgraphviz
updated 16.5 years ago by 16k • written 16.5 years ago by ★ 1.6k
0
votes
3
replies
1.2k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 15.8 years ago by ▴ 730 • written 15.8 years ago by ▴ 110
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
0
votes
1
reply
1.3k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 10
0
votes
1
reply
863
views
[bioC] GenePlotter for mgu74v2
GO Cancer mgu74a mgu74av2 geneplotter GO Cancer mgu74a mgu74av2 geneplotter
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ★ 2.9k
0
votes
1
reply
809
views
using geneplotter with my own data
geneplotter geneplotter
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
0
votes
1
reply
859
views
Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 500
0
votes
1
reply
1.8k
views
install geneplotter
geneplotter geneplotter
updated 10.4 years ago by 65k • written 10.4 years ago by ★ 13k
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votes
2
replies
1.4k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 540
0
votes
1
reply
934
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.0 years ago by 21k • written 19.0 years ago by ▴ 30
0
votes
1
reply
961
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
votes
0
replies
732
views
geneplotter and base position
Annotation geneplotter affy Annotation geneplotter affy
19.9 years ago david neil hayes ▴ 70
0
votes
0
replies
1.5k
views
peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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