Showing : gostats • reset
0
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10
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4.2k
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GOStat and multiple testing
GO GOstats GO GOstats
updated 19.7 years ago by ▴ 810 • written 19.8 years ago by ▴ 620
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votes
6
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1.4k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by ★ 7.4k
0
votes
12
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2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.2 years ago michael watson IAH-C ★ 3.4k
0
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6
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1.3k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 430
0
votes
5
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1.6k
views
Measuring similarities beween GO terms graphs
Annotation GO GOstats Annotation GO GOstats
updated 16.7 years ago by ▴ 50 • written 16.7 years ago by ▴ 500
0
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7
replies
1.4k
views
Gene Ontology relationships
Cancer GOstats Cancer GOstats
updated 16.9 years ago by ★ 1.4k • written 16.9 years ago by ★ 7.4k
0
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10
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1.9k
views
comparing GO lists
Annotation GO Cancer graph GOstats Annotation GO Cancer graph GOstats
updated 16.8 years ago by ▴ 130 • written 16.8 years ago by ★ 5.5k
0
votes
8
replies
1.5k
views
Help with HyperGTest
Annotation probe GOstats Annotation probe GOstats
14.5 years ago Yue, Chen - BMD ▴ 60
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.4k
0
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5
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1.4k
views
GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe
GOstats GOstats
updated 14.7 years ago by ▴ 200 • written 14.8 years ago by ▴ 90
0
votes
4
replies
1.8k
views
Gene Ontology analysis for non-affy data
GO GOstats topGO GO GOstats topGO
updated 14.6 years ago by ▴ 400 • written 14.6 years ago by ▴ 50
0
votes
6
replies
2.2k
views
GOstats and KEGG
Pathways GO GOstats Pathways GO GOstats
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 190
0
votes
11
replies
1.8k
views
GOstats and GenePix arrays
GO GOstats GO GOstats
18.0 years ago Jacob Michaelson ▴ 320
0
votes
3
replies
1.7k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ▴ 630
0
votes
4
replies
1.3k
views
Error with Rgraphviz
GOstats GOstats
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 300
3
votes
10
replies
1.3k
views
GO Stats results contain GO terms NOT present in the gene universe
gostats
updated 6.0 years ago by • 0 • written 6.0 years ago by ▴ 20
0
votes
6
replies
1.2k
views
.pdf files of GOstats documents
GOstats GOstats
updated 19.2 years ago by ★ 3.4k • written 19.2 years ago by ▴ 720
6
votes
6
replies
3.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 7.2 years ago by ▴ 10 • written 7.9 years ago by ▴ 300
0
votes
8
replies
2.1k
views
PFAM Enrichment in GOstats
PFAM Category GOstats
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 930
1
vote
10
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2.3k
views
Filtering genes for GOstats
gostats
9.2 years ago nonCodingGene ▴ 10
0
votes
5
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1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
0
votes
3
replies
1.4k
views
question using GSEABase
GO GOstats topGO GSEABase GO GOstats topGO GSEABase
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 80
0
votes
12
replies
2.3k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 20
0
votes
14
replies
2.5k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 16.5 years ago by ▴ 170 • written 16.5 years ago by ▴ 260
0
votes
5
replies
2.0k
views
GOstats, geneCounts and gene universe filtering...
GO rat2302 probe GOstats topGO GO rat2302 probe GOstats topGO
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 110
0
votes
5
replies
1.6k
views
AnnBuilder with custmerized GO annotation
Annotation GO GOstats Annotation GO GOstats
updated 17.0 years ago by ▴ 870 • written 17.0 years ago by ▴ 120
0
votes
4
replies
1.3k
views
GOstats locked database
GO Cancer GOstats GO Cancer GOstats
16.3 years ago Janet Young ▴ 740
0
votes
3
replies
2.7k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
10.1 years ago Christine Gläßer ▴ 60
0
votes
4
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1.2k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 650
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votes
4
replies
1.1k
views
Incomplete EntrezID annotations for the Mouse 430 v2.0 probe-set
Annotation GO affy GOstats Annotation GO affy GOstats
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 110
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votes
2
replies
1.1k
views
(no subject)
GO GOstats GO GOstats
updated 19.8 years ago by ▴ 10 • written 19.8 years ago by ▴ 300
0
votes
3
replies
1.9k
views
Can not install 'affyio' with compiler icc on redhat linux ES5
GOstats GOstats
updated 7.9 years ago by ▴ 10 • written 13.4 years ago by ▴ 10
0
votes
7
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1.4k
views
no summary of GOHyperGResult
GO GOstats Category GO GOstats Category
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 280
0
votes
8
replies
2.0k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.1 years ago by ▴ 930 • written 13.1 years ago by ▴ 860
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votes
2
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1.2k
views
GO.db and Gostats question
Annotation GO PROcess GOstats Annotation GO PROcess GOstats
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 570
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votes
2
replies
1000
views
annotation for illumina mouse-6 arrays? & GOstats
Annotation GO GOstats Annotation GO GOstats
updated 14.6 years ago by ★ 1.1k • written 14.6 years ago by ▴ 50
0
votes
2
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1.6k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 14.4 years ago by ▴ 70 • written 14.4 years ago by ▴ 60
0
votes
5
replies
2.2k
views
GOstats problem with output
Annotation GO GOstats Annotation GO GOstats
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ★ 1.5k
0
votes
2
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1.2k
views
KEGG.db in GoStats with Streptomyces coelicolor
Microarray Annotation GOstats Microarray Annotation GOstats
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 20
0
votes
9
replies
1.4k
views
Rgraphviz for Windows
Rgraphviz GOstats Rgraphviz GOstats
updated 19.7 years ago by ★ 3.9k • written 19.7 years ago by ▴ 20
0
votes
8
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1.8k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 270
0
votes
3
replies
1.4k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
15.2 years ago Yolande Tra ▴ 160
0
votes
2
replies
990
views
GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 70
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
4
replies
1.5k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 15.6 years ago by ▴ 510 • written 15.6 years ago by ▴ 930
0
votes
2
replies
887
views
GOstats gene set size selection
GO GOstats GO GOstats
updated 16.0 years ago by ★ 5.5k • written 16.1 years ago by ▴ 30
0
votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 80
0
votes
4
replies
1.1k
views
lumiHumanAll.db, GOstats
Clustering GOstats Clustering GOstats
updated 15.9 years ago by ★ 3.6k • written 15.9 years ago by ▴ 270
0
votes
2
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1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 320
0
votes
2
replies
1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
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Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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