Showing : gotools • reset
2
votes
5
replies
230
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 9 days ago by 65k • written 11 days ago by • 0
0
votes
0
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759
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
0
votes
2
replies
1.8k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 11.8 years ago by 65k • written 11.8 years ago by ★ 13k
0
votes
3
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4.8k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
votes
9
replies
1.8k
views
ontoCompare (goTools) : goidvect error
GO goTools GO goTools
12.8 years ago Oana VIGY ▴ 80
0
votes
2
replies
1.9k
views
help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 13.6 years ago by ▴ 550 • written 13.6 years ago by ▴ 100
0
votes
0
replies
854
views
goTools question
probe goTools probe goTools
13.6 years ago Pete Shepard ▴ 240
0
votes
0
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972
views
obtaining GOID from nuID
GO goTools lumi GO goTools lumi
14.3 years ago Md.Mamunur Rashid ▴ 260
0
votes
1
reply
1.0k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
0
votes
0
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745
views
question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
14.8 years ago Oana VIGY ▴ 80
0
votes
1
reply
1.2k
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 14.8 years ago by ▴ 270 • written 14.8 years ago by ▴ 300
0
votes
1
reply
1.1k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.9 years ago by ▴ 60 • written 14.9 years ago by ▴ 50
0
votes
4
replies
1.4k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 15.5 years ago by ▴ 90 • written 15.5 years ago by ▴ 830
0
votes
0
replies
780
views
goTools package - extract genes
GO probe goTools GO probe goTools
15.9 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
0
votes
1
reply
895
views
Reporting results of HyperGTest
GO goTools GO goTools
updated 16.1 years ago by ▴ 20 • written 16.1 years ago by ▴ 320
0
votes
1
reply
1.0k
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
16.6 years ago Naomi Altman ★ 6.0k
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
3
replies
1.3k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 80
0
votes
0
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1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.1 years ago Paquet, Agnes ▴ 500
0
votes
0
replies
921
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
17.2 years ago Paquet, Agnes ▴ 500
0
votes
1
reply
868
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 40
0
votes
1
reply
866
views
Using ontoCompare with local GO database
GO goTools GO goTools
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 100
0
votes
1
reply
1.0k
views
goTools problem
goTools oligo goTools oligo
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 30
0
votes
1
reply
1.2k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 17.7 years ago by ▴ 870 • written 17.7 years ago by ▴ 340
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.2 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.0k
views
GO Tools
GO goTools GO goTools
19.0 years ago Paquet, Agnes ▴ 500
0
votes
0
replies
884
views
GO Tools
goTools goTools
19.0 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
893
views
annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 300
0
votes
2
replies
1.1k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
0
votes
1
reply
1.3k
views
GOtools: argument is of length zero
goTools goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
31 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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