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gsva
•
reset
9
votes
7
replies
24k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 2.2 years ago by
amin8w
▴ 10 • written 8.5 years ago by
sina.nassiri
▴ 130
3
votes
9
replies
12k
views
Does GSVA enrichment score comes negative?
GSVA
9.6 years ago • updated 8.8 years ago
pbachali
▴ 50
1
vote
3
replies
12k
views
GSVA and ssGSEA output differences
enrichment
GSVA
enrichplot
ssGSEA
updated 3.8 years ago by
Robert Castelo
★ 3.4k • written 3.9 years ago by
Davide
• 0
12
votes
10
replies
9.9k
views
Pre-processing RNA-seq data (normalization and transformation) for GSVA
gsva
gene set variation analysis
normalization
transformation
rna-seq
7.9 years ago • updated 7.0 years ago
rached
▴ 60
0
votes
8
replies
9.8k
views
GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
GSVA
updated 3.4 years ago by
Robert Castelo
★ 3.4k • written 5.0 years ago by
Siyuan
• 0
1
vote
6
replies
7.9k
views
GSVA on RNAseq data
gsva
rnaseq
updated 11 months ago by
Robert Castelo
★ 3.4k • written 6.8 years ago by
rocanja
▴ 60
2
votes
2
replies
6.9k
views
Error in running gsva function from GSVA package
gsva
updated 10.2 years ago by
Robert Castelo
★ 3.4k • written 10.2 years ago by
Momeneh Foroutan
▴ 10
2
votes
5
replies
6.6k
views
GSVA error - incomplete instalation?
GSVA
ExpressionSet
10.2 years ago
thrabe
• 0
1
vote
2
replies
6.5k
views
GSVA error
GSVA
22 months ago
Alex
• 0
4
votes
4
replies
6.2k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 16 months ago by
tifaGis
• 0 • written 2.2 years ago by
snijesh
▴ 200
0
votes
5
replies
6.0k
views
Convert gene expression matrix to ExpressionSet
GSVA
GSVA
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Wendy Qiao
▴ 360
0
votes
8
replies
6.0k
views
GSVA: problem with chip annotation
gsva
updated 11.3 years ago by
Robert Castelo
★ 3.4k • written 11.3 years ago by
q017mm
• 0
2
votes
10
replies
5.5k
views
How to compare two or more GSVA outputs, when it is not possible to run GSVA at once
gsva
updated 5.6 years ago by
Robert Castelo
★ 3.4k • written 5.6 years ago by
hsiowa2
▴ 20
2
votes
7
replies
5.4k
views
Issue with GSVA using dgCMatrix
GSVA
updated 23 months ago by
Moritz
▴ 10 • written 4.6 years ago by
resa
• 0
5
votes
4
replies
4.9k
views
Differential expression on GSVA scores using LIMMA
limma
gsva
updated 6.9 years ago by
Robert Castelo
★ 3.4k • written 6.9 years ago by
rocanja
▴ 60
0
votes
1
reply
4.8k
views
GSVA Problem
GSVA
updated 4.7 years ago by
Robert Castelo
★ 3.4k • written 4.7 years ago by
tywzlzl2011
• 0
0
votes
9
replies
4.8k
views
problem with using GSVA package
GSVA
GSVA
updated 14.3 years ago by
Robert Castelo
★ 3.4k • written 14.3 years ago by
Wendy Qiao
▴ 360
7
votes
11
replies
4.5k
views
Updating Gene Annotation in GeneSetCollection {GSEABase}
GSEABase
annotation
gsea
gsva
GeneSetCollection
updated 5.8 years ago by
Robert Castelo
★ 3.4k • written 5.8 years ago by
rocanja
▴ 60
2
votes
1
reply
4.5k
views
Dealing with the output of ssGSEA method from GSVA package
gsva
ssgsea
10.2 years ago
Momeneh Foroutan
▴ 10
2
votes
5
replies
4.5k
views
Problem encountered when running GSVA for RNAseq
gsva
rnaseq
updated 11.3 years ago by
Robert Castelo
★ 3.4k • written 11.3 years ago by
polly0806
• 0
3
votes
6
replies
4.1k
views
How can I avoid artifacts in gene set/pathway scoring by UCell and similar algorithms?
escape
UCell
GSVA
updated 2.2 years ago by
arina
▴ 10 • written 3.0 years ago by
Omer
• 0
0
votes
3
replies
4.1k
views
Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
GSEA
GSVA
updated 3.3 years ago by
rocanja
▴ 60 • written 3.6 years ago by
João
• 0
1
vote
12
replies
4.0k
views
GSVA (running group samples separately)
GSVA
updated 5.7 years ago by
Robert Castelo
★ 3.4k • written 5.8 years ago by
Jenn
▴ 30
4
votes
2
replies
4.0k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 2.6 years ago by
Gordon Smyth
53k • written 2.6 years ago by
Jonathan
▴ 10
0
votes
5
replies
3.9k
views
nsFilter error in genefilter
GSVA
GSVA
updated 12.8 years ago by
Robert Castelo
★ 3.4k • written 12.8 years ago by
Guest User
★ 13k
2
votes
4
replies
3.9k
views
Are singscore scores comparable between gene sets?
singscore
GSVA
GSEA
subtypes
geneset
updated 5.1 years ago by
Dharmesh D Bhuva
• 0 • written 6.9 years ago by
Pietro
▴ 40
3
votes
4
replies
3.9k
views
Why Negative value from GSVA
GSVA
RNASeq
edgeR
3.6 years ago
Yang Shi
▴ 10
1
vote
11
replies
3.8k
views
Error in .local(expr, gset.idx.list, ...) : Please install the nnotation package hgu95a, but I can't install hgu95a
GSVA
updated 4.6 years ago by
soudayo
▴ 10 • written 5.5 years ago by
yaoxucpu
• 0
5
votes
4
replies
3.8k
views
GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment
GSVA
ssGSEA
updated 15 months ago by
Tyler Sagendorf
▴ 10 • written 16 months ago by
Bob
▴ 30
0
votes
11
replies
3.8k
views
GSVA: using Entrez ID's as identifiers
probe
GSVA
probe
GSVA
updated 14.2 years ago by
Robert Castelo
★ 3.4k • written 14.2 years ago by
Wendy Qiao
▴ 360
2
votes
1
reply
3.7k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea
ssgsea
gsva
pathways
updated 5.6 years ago by
Robert Castelo
★ 3.4k • written 5.6 years ago by
igor
▴ 50
2
votes
3
replies
3.6k
views
Selecting or not selecting samples before running GSVA
GSVA
updated 5.1 years ago by
Robert Castelo
★ 3.4k • written 5.1 years ago by
hsiowa2
▴ 20
5
votes
16
replies
3.6k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 8.3 years ago by
Robert Castelo
★ 3.4k • written 8.3 years ago by
JasonL_Weirather
▴ 10
1
vote
2
replies
3.5k
views
GSVA for single sample
gsea
gsva
ssgsea
8.0 years ago
jaison75
▴ 20
1
vote
1
reply
3.4k
views
Method and kcdf arguments in gsva package
GSVA
updated 5.8 years ago by
Robert Castelo
★ 3.4k • written 5.8 years ago by
thkapell
▴ 10
8
votes
3
replies
3.4k
views
GSVA indifferent to 'abs.ranking'
GSVA
gsva
abs.ranking
updated 8.8 years ago by
Robert Castelo
★ 3.4k • written 8.8 years ago by
sina.nassiri
▴ 130
4
votes
2
replies
3.4k
views
GSVA: questions about the bootstrap p-value
gsva
updated 8.6 years ago by
Robert Castelo
★ 3.4k • written 8.7 years ago by
dionnezaal
▴ 30
0
votes
5
replies
3.4k
views
parallel and GSVA
PROcess
GSVA
PROcess
GSVA
updated 13.1 years ago by
Steve Lianoglou
★ 13k • written 13.1 years ago by
David Iles
▴ 130
0
votes
3
replies
3.4k
views
[GSVA] Segfault with GSVA
RNASeq
Microarray
Annotation
gcrma
convert
GSVA
RNASeq
Microarray
Annotation
gcrma
GSVA
updated 13.1 years ago by
capricy gao
▴ 230 • written 13.1 years ago by
Robert Castelo
★ 3.4k
2
votes
2
replies
3.2k
views
Questions regard to GSVA and Limma
limma
GSVA
4.6 years ago
Chenxi
• 0
5
votes
9
replies
3.2k
views
GSVA perfomed on RSEM Expected Count data
GSVA
RNA-Seq
RSEM
Expected_Count
3.5 years ago
Yang Shi
▴ 10
0
votes
5
replies
3.1k
views
GSVA questions
cdf
GSVA
cdf
GSVA
12.4 years ago
Guest User
★ 13k
0
votes
5
replies
3.1k
views
GSVA error
GSVA
GSVA
updated 13.0 years ago by
Robert Castelo
★ 3.4k • written 13.0 years ago by
Guest User
★ 13k
1
vote
5
replies
3.1k
views
'combined score' calculation with singscore vs gsva
singscore
GSVA
3.3 years ago • updated 3.2 years ago
rocanja
▴ 60
1
vote
4
replies
3.0k
views
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA
GSVAdata
RNAseq
19 months ago • updated 18 months ago
Lucy
▴ 60
0
votes
3
replies
3.0k
views
GSVA results interpretation
GSVA
updated 3.1 years ago by
Robert Castelo
★ 3.4k • written 3.1 years ago by
munta.jihad
• 0
2
votes
4
replies
2.9k
views
Failed to install Biobase
GSVA
Biobase
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
johann.brisseau
• 0
5
votes
5
replies
2.9k
views
Unused arguments error without used arguments in GSVA?
GSVA
updated 10 months ago by
michaelarringtony
• 0 • written 12 months ago by
1sunmic2
• 0
1
vote
4
replies
2.9k
views
Meaning of zero for ssGESA value calculated by GSVA package
gsva
updated 7.6 years ago by
Robert Castelo
★ 3.4k • written 7.6 years ago by
Shi-Xiang Wang
• 0
2
votes
2
replies
2.8k
views
Using GSVA All the pathway score are same
GSVA
scRNA-seq data
updated 5.6 years ago by
Robert Castelo
★ 3.4k • written 5.6 years ago by
initialqy
• 0
99 results • Page
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