Bioconductor Help

Showing : help • reset

votes

replies

2.5k

views

edger differential gene expression without replicate nested design help

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by knipehf • 0

votes

replies

1.3k

views

HELP HelloRanges

updated 19 months ago by James W. MacDonald 66k • written 19 months ago by michela ▴ 20

votes

replies

1.4k

views

RNASeqData RNASeq GEO RNASeqR HELP

3.1 years ago hgalmoore • 0

votes

replies

1.8k

views

STRINGdb HELP

updated 15 months ago by Rodrigo ▴ 10 • written 2.2 years ago by Jessica ▴ 10

votes

replies

1.4k

views

DESeq2 HELP

15 months ago Michael • 0

vote

replies

6.1k

views

clusterprofiler input files error help

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by Mataivic • 0

vote

replies

4.3k

views

help DESeq2 DESeqDataSetFromMatrix rownames

updated 23 months ago by Sanatan • 0 • written 3.1 years ago by dorina.jamniczky • 0

vote

replies

2.5k

views

HELP ChIPpeakAnno

2.5 years ago lexi.kellington • 0

votes

replies

1.4k

views

limma help

updated 8.5 years ago by svlachavas ▴ 830 • written 8.5 years ago by libya.tahani • 0

votes

replies

1.6k

views

HELP ChIC.data PeakDetection ChipOnChipData

19 months ago michela ▴ 20

votes

replies

1.9k

views

R deseq2 differential gene expression help

7.9 years ago fischer87 • 0

votes

replies

1.0k

views

limma time series help

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by rm1238 • 0

votes

2.0k

views

help software error

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by mafusa20 • 0

votes

345

views

bachelorthesis help HELP

updated 9 months ago by DrFizz • 0 • written 9 months ago by melander • 0

votes

replies

1.3k

views

DESeq2 volcanoplot deseq HELP contrast

updated 15 months ago by Basti ▴ 780 • written 15 months ago by Michael • 0

votes

replies

734

views

ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

19 months ago michela ▴ 20

votes

582

views

HELP Data

updated 20 months ago by Guido Hooiveld ★ 4.0k • written 20 months ago by mcclurejenniferc • 0

17 results • Page 1 of 1

Recent ...

Replies

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…

Comment: ChAMP installation issue by Tahirah • 0

Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k

Yes, you can use `limma`.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Awards • All

Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10