Showing : hg38 • reset
6
votes
3
replies
1.0k
views
Annotating all SNVs in a genomic area, based on HG38 coordinates
Annotation variation HG38
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
2
votes
5
replies
2.4k
views
getGeneLengthAndGCContent: "zero or more than one input sequence"
edaseq normalization hg38 biomart org.db
updated 6.4 years ago by ▴ 950 • written 6.4 years ago by • 0
2
votes
7
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2.6k
views
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv
updated 7.1 years ago by 41k • written 7.1 years ago by • 0
2
votes
4
replies
984
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 4.2 years ago by ▴ 160 • written 4.2 years ago by • 0
1
vote
1
reply
2.1k
views
package ‘BSgenome.Hsapiens.UCSC.hg38’ is not available (for R version 3.1.2)
bsgenome hg38 r version 3.1.2
updated 8.6 years ago by 65k • written 8.6 years ago by • 0
0
votes
2
replies
1.5k
views
problem running featurecounts using hg38 in-built annotation
featurecounts hg38
6.9 years ago raf4 ▴ 20
0
votes
4
replies
2.2k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 7.5 years ago by ★ 3.6k • written 7.5 years ago by • 0
0
votes
1
reply
362
views
Is SeqSQC compatible with hg38?
SeqSQC hg38
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
1
reply
693
views
Genic annotations of whole hg38
hg38 genicannotations
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
9 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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