Showing : hgu133a • reset
0
votes
9
replies
1.5k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 30
0
votes
6
replies
1.3k
views
mapping probe sets from yeast2 array to probe sets in hgu133A
hgu133a yeast2 probe hgu133a yeast2 probe
updated 13.7 years ago by ▴ 60 • written 13.7 years ago by ▴ 350
0
votes
5
replies
2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
0
votes
5
replies
1.3k
views
Missing chromosomal locations in hgu133a package
hgu133a AnnBuilder safe hgu133a AnnBuilder safe
updated 17.8 years ago by ▴ 870 • written 17.8 years ago by ▴ 60
0
votes
5
replies
1.6k
views
R crashes with GEOmetadb
hgu133a hgu133a
updated 12.8 years ago by 21k • written 12.8 years ago by ★ 3.9k
6
votes
5
replies
2.6k
views
Is filtering necessary to extract significant DE genes with limma ?
hgu133a
updated 8.0 years ago by 50k • written 8.0 years ago by ▴ 40
0
votes
5
replies
5.4k
views
How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 8.9 years ago by • 0 • written 10.0 years ago by ★ 13k
0
votes
5
replies
910
views
How to use datapackage homology
hgu133a rae230a hgu133a rae230a
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 110
0
votes
5
replies
2.0k
views
Combining HGU133A & HGU133B data
hgu133a hgu133b hgu133a hgu133b
updated 20.6 years ago by ★ 1.1k • written 20.6 years ago by ▴ 80
0
votes
4
replies
1.4k
views
errors in FRMA
Annotation hgu133a2 hgu133a frma Annotation hgu133a2 hgu133a frma
updated 12.0 years ago by ▴ 830 • written 12.0 years ago by ▴ 510
0
votes
4
replies
1.4k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
0
votes
4
replies
1.4k
views
TimmR error for hgu133a.db
software error annotate hgu133a
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
0
votes
4
replies
1.3k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ★ 1.1k
0
votes
3
replies
1.1k
views
missing GO identifier in hgu133a GO
GO hgu133a hgu133b GO hgu133a hgu133b
updated 21.5 years ago by ★ 5.5k • written 21.5 years ago by ▴ 20
2
votes
3
replies
2.4k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
6.1 years ago Chris Mancuso • 0
1
vote
3
replies
1.9k
views
Analyse of HGU133 set / Merge ExpressionSet
affy hgu133a hgu133b
updated 8.1 years ago by 65k • written 8.1 years ago by ▴ 40
2
votes
3
replies
1.4k
views
unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 50
0
votes
3
replies
1.3k
views
hgu133a annotation and discontinued Entrez IDs
Annotation hgu133a limma Annotation hgu133a limma
15.9 years ago David Fermin ▴ 20
0
votes
3
replies
903
views
annotation of hgu133a
Annotation hgu133a Annotation hgu133a
updated 17.0 years ago by 21k • written 17.0 years ago by ★ 1.2k
0
votes
3
replies
1.6k
views
Application of multiple testing correction in the context of using Stouffer's method for combing p-values
Microarray hgu133a probe Microarray hgu133a probe
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by ▴ 300
0
votes
3
replies
1.7k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 100
0
votes
3
replies
1.4k
views
combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.0 years ago Mayte Suarez-Farinas ▴ 510
1
vote
3
replies
1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
0
votes
3
replies
1.4k
views
Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
Annotation GO hgu133a Annotation GO hgu133a
updated 14.7 years ago by ▴ 940 • written 14.7 years ago by ★ 2.0k
0
votes
3
replies
1.2k
views
annotating genes using KEGG
hgu133a cdf hgu133a cdf
15.2 years ago dhaarini s ▴ 70
0
votes
3
replies
960
views
Trouble using GOstats
GO hgu133a Category GO hgu133a Category
updated 19.1 years ago by ★ 5.5k • written 19.1 years ago by ▴ 80
0
votes
3
replies
853
views
Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 550
0
votes
2
replies
950
views
hyperGTest
GO hgu133a hgu133plus2 hgu95av2 GO hgu133a hgu133plus2 hgu95av2
updated 15.5 years ago by ★ 5.5k • written 15.5 years ago by ★ 1.2k
0
votes
2
replies
1.0k
views
Integrating hgu133a and hgu133a2
hgu133a2 hgu133a cdf affy hgu133a2 hgu133a cdf affy
16.0 years ago Chintanu ▴ 310
2
votes
2
replies
1.2k
views
around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation biomart hgu133a
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
0
votes
2
replies
1.9k
views
ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 110
0
votes
2
replies
1.4k
views
goTools package, ontoCompare error
Microarray GO hgu133a Microarray GO hgu133a
updated 14.5 years ago by 65k • written 14.5 years ago by ▴ 20
0
votes
2
replies
2.3k
views
KEGG pathways gene list
hgu133a hgu133a
updated 17.0 years ago by ★ 1.2k • written 17.0 years ago by ▴ 600
0
votes
2
replies
1.1k
views
RMA of CEL files from different chip types
hgu133a hgu133plus2 hgu133a hgu133plus2
updated 16.6 years ago by ▴ 190 • written 16.6 years ago by ▴ 10
0
votes
2
replies
1.1k
views
retrieve expression of all probes in the probe set
hgu133a probe hgu133a probe
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 240
0
votes
2
replies
1.9k
views
how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
14.8 years ago Venkat Sundar ▴ 30
0
votes
2
replies
878
views
error with results.summary in simpleaffy
Cancer hgu133a probe Cancer hgu133a probe
18.8 years ago Jack Zhu ▴ 30
0
votes
2
replies
1.7k
views
Memory limit (vector size) o linux 64bit
hgu133a hgu133a
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 20
0
votes
2
replies
1.5k
views
KEGGgraph, error
Organism hgu133a KEGGgraph Organism hgu133a KEGGgraph
updated 15.0 years ago by ▴ 20 • written 15.0 years ago by ▴ 380
0
votes
2
replies
964
views
Extract top-ranked genes from model fit
Annotation GO hgu133a Annotation GO hgu133a
updated 14.5 years ago by 65k • written 14.5 years ago by ▴ 310
0
votes
2
replies
1.3k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 11.4 years ago by 65k • written 11.4 years ago by ★ 13k
0
votes
2
replies
1.2k
views
biomaRt query
GO hgu133a GO hgu133a
updated 14.5 years ago by ▴ 600 • written 14.5 years ago by ★ 1.1k
0
votes
1
reply
610
views
Environments in affy data packages?
Annotation hgu133a affy Annotation hgu133a affy
updated 21.1 years ago by ★ 2.9k • written 21.1 years ago by ▴ 60
0
votes
1
reply
909
views
gcrma memory problems in R1.8.1 and R1.9.0-devel
hgu133a gcrma hgu133a gcrma
updated 20.3 years ago by ▴ 720 • written 20.3 years ago by ★ 1.4k
0
votes
1
reply
904
views
How to extract log ratios from two color arrays
GO hgu133a maanova GO hgu133a maanova
15.7 years ago Heike Pospisil ▴ 310
0
votes
1
reply
927
views
MM > PM intensities
hgu133a hgu133a
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ★ 1.3k
0
votes
1
reply
1.1k
views
combining hgu133a hgu133b
hgu133a hgu133b annotate hgu133a hgu133b annotate
updated 19.5 years ago by ★ 1.8k • written 19.5 years ago by ▴ 250
0
votes
1
reply
616
views
non appearing AffyIDs cColor
hgu133a hgu133a
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 250
0
votes
1
reply
777
views
Assess inter-study consistency
GO hgu133a probe GO hgu133a probe
updated 15.6 years ago by ▴ 750 • written 15.6 years ago by ▴ 300
0
votes
1
reply
932
views
add a gene symbol colums in an exprSet or a matrix / infinite recursion error message
hgu133a hgu133a
updated 19.6 years ago by ▴ 120 • written 19.6 years ago by ★ 5.5k
50 results • Page 1 of 1
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Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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